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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1218544 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00836335_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Exon 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 6 1155 NP_057260.2
NM_016547.2 6 1155 NP_057631.1
AF132749.1 6 1069 AAL75950.1
AF153686.1 6 1135 AAD51612.1
AF178986.1 6 1119 AAF44350.1
AK000717.1 4 2018
AK027277.1 7 747 BAB55012.1
AK055331.1 1 1750
AK075352.1 6 1089 BAC11563.1
AK126927.1 2 2673
AK222521.1 6 1073 BAD96241.1
AK223079.1 6 1071 BAD96799.1
AK315517.1 6 1074
BC006211.2 6 1036 AAH06211.1
BC007625.1 5 904 AAH07625.1
BC008917.2 6 1055 AAH08917.1
BC011244.1 6 1009 AAH11244.1
BC022375.1 6 1089 AAH22375.1
L79912.1 5 834 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss TMEM88B LINC00115 KLHL17 LOC100287934 CDK11A GABRD FAM41C ANKRD65 CDK11B MIR6727 UBE2J2 NADK FNDC10 LOC101928626 LOC105378948 LOC100132287 MIR1302-2 MIR200A LOC105378592 MIR6859-1 LOC107984841 LOC102724312 MORN1 DDX11L1 MXRA8 CCNL2 LOC105378947 NOC2L PRKCZ SCNN1D MIR6859-2 LOC148413 TTLL10-AS1 GNB1 SDF4 LINC01342 FAM132A MMP23A B3GALT6 OR4F5 LOC100288069 SAMD11 SLC35E2 WASH7P AURKAIP1 ATAD3B TMEM52 MRPL20 PERM1 CPSF3L LOC100288175 LINC01128 TTLL10 LOC107985728 TMEM240 TNFRSF4 LOC105378589 ACAP3 FAAP20 MIR429 PUSL1 SSU72 FAM87B LOC100129534 C1orf159 LOC729737 LOC100133331 MMP23B MIR200B LOC100506504 DVL1 LOC102725121 ATAD3A VWA1 ISG15 CFAP74 MTND1P23 HES4 MIB2 MIR6723 ATAD3C TNFRSF18 LOC107985729 SKI FAM138A PLEKHN1 LOC105378949 SLC35E2B LOC100134822 MIR6808 LOC284600 MTND2P28 CPTP MIR6726 OR4F16 LOC105378591 RNF223 TAS1R3 OR4F29 CALML6 LOC100130417 AGRN
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss ACAP3 MIR6726 UBE2J2 FAM132A B3GALT6 SCNN1D SDF4
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain LINC01342 UBE2J2 FAM132A MIR200B B3GALT6 LOC105378948 SCNN1D MIR429 TTLL10 MIR200A TTLL10-AS1 RNF223 TNFRSF18 SDF4 C1orf159 TNFRSF4
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss ACAP3 LINC01342 UBE2J2 FAM132A MIR200B B3GALT6 SCNN1D MIR429 TTLL10 MIR6726 MIR200A TTLL10-AS1 RNF223 TNFRSF18 SDF4 C1orf159 TNFRSF4
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10 TTLL10-AS1 B3GALT6 TNFRSF18 SDF4 TNFRSF4
nsv159887 Chr.1:1217713 - 1222580 on Build GRCh38 Deletion SDF4
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain MIR200B NOC2L KLHL17 LOC100288175 ISG15 TTLL10 TTLL10-AS1 LOC107985728 HES4 TNFRSF18 FAM41C SDF4 TNFRSF4 PLEKHN1 LINC01342 LOC105378948 LOC284600 MIR429 SAMD11 MIR200A RNF223 C1orf159 LOC100130417 AGRN PERM1
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication CPSF3L MIR200B LOC100288175 SCNN1D TTLL10 TTLL10-AS1 TNFRSF18 SDF4 TNFRSF4 MIR6727 ACAP3 LINC01342 UBE2J2 FAM132A B3GALT6 LOC105378948 MIR429 CPTP MIR6726 MIR200A PUSL1 RNF223 TAS1R3 C1orf159 AGRN
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss CPSF3L TMEM88B LINC00115 KLHL17 LOC100288175 LOC100287934 LINC01128 CDK11A TTLL10 LOC107985728 FAM41C TMEM240 ANKRD65 TNFRSF4 CDK11B MIR6727 ACAP3 UBE2J2 NADK FNDC10 LOC105378948 MIR429 MIR200A PUSL1 SSU72 FAM87B LOC102724312 C1orf159 MXRA8 MMP23B CCNL2 MIR200B NOC2L SCNN1D DVL1 ATAD3A VWA1 ISG15 LOC148413 TTLL10-AS1 HES4 MIB2 ATAD3C TNFRSF18 LOC107985729 SDF4 PLEKHN1 LINC01342 FAM132A SLC35E2B MMP23A B3GALT6 MIR6808 LOC284600 LOC100288069 CPTP SAMD11 SLC35E2 AURKAIP1 ATAD3B MIR6726 MRPL20 RNF223 TAS1R3 LOC100130417 AGRN PERM1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LINC00115 MIR200B NOC2L KLHL17 LOC100288175 LINC01128 ISG15 TTLL10 TTLL10-AS1 LOC107985728 HES4 TNFRSF18 FAM41C SDF4 TNFRSF4 PLEKHN1 LINC01342 UBE2J2 FAM132A B3GALT6 LOC105378948 LOC284600 MIR429 SAMD11 MIR200A FAM87B RNF223 C1orf159 LOC100130417 AGRN PERM1
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MXRA8 MMP23B CPSF3L CCNL2 TMEM88B MIR200B SCNN1D DVL1 ATAD3A VWA1 TTLL10 LOC148413 TTLL10-AS1 MIB2 ATAD3C TNFRSF18 TMEM240 ANKRD65 LOC107985729 SDF4 TNFRSF4 CDK11B MIR6727 ACAP3 LINC01342 UBE2J2 FAM132A FNDC10 B3GALT6 MIR6808 MIR429 CPTP AURKAIP1 ATAD3B MIR6726 MIR200A PUSL1 MRPL20 SSU72 TAS1R3 LOC102724312 C1orf159
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MXRA8 CPSF3L CCNL2 TMEM88B MIR200B NOC2L KLHL17 LOC100288175 SCNN1D DVL1 ISG15 TTLL10 LOC148413 TTLL10-AS1 LOC107985728 HES4 TNFRSF18 ANKRD65 SDF4 TNFRSF4 MIR6727 ACAP3 PLEKHN1 LINC01342 UBE2J2 FAM132A B3GALT6 MIR6808 LOC105378948 LOC284600 MIR429 CPTP SAMD11 AURKAIP1 MIR6726 MIR200A PUSL1 MRPL20 RNF223 TAS1R3 C1orf159 LOC100130417 AGRN PERM1
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion PLEKHN1 LINC01342 MIR200B NOC2L KLHL17 LOC100288175 LOC105378948 MIR429 SAMD11 ISG15 TTLL10 MIR200A TTLL10-AS1 HES4 RNF223 TNFRSF18 SDF4 C1orf159 AGRN TNFRSF4 PERM1
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain ACAP3 UBE2J2 CPSF3L FAM132A MIR200B B3GALT6 SCNN1D MIR429 TTLL10 MIR6726 MIR200A PUSL1 TTLL10-AS1 TNFRSF18 SDF4 TNFRSF4 MIR6727

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