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See other CPSF3L CNV Assays ›
Gene Symbol
CPSF3L
Assay Reference Genome
Location

Chr.1:1321048 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00873764_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 54973

Gene Name:

 cleavage and polyadenylation specific factor 3-like

Gene Aliases:

 CPSF73L, INT11, INTS11, RC-68, RC68

Location:

 Chr.1:1311585-1324687 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 3 - Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CPSF3L NM_001256456.1 NP_001243385.1
NM_001256460.1 NP_001243389.1
NM_001256462.1 NP_001243391.1
NM_001256463.1 NP_001243392.1
NM_017871.5 NP_060341.2
XM_011541647.1 XP_011539949.1
XM_011541648.1 XP_011539950.1
XM_011541650.1 XP_011539952.1
XM_017001557.1 XP_016857046.1
XM_017001558.1 XP_016857047.1
AK021939.1 BAB13943.1
AK022675.1
AK023356.1 BAB14541.1
AK027767.1
AK056652.1
AK058018.1
AK092190.1
AK291387.1
AK297350.1
AL136813.1 CAB66747.1
BC007978.2 AAH07978.1
BC008041.2 AAH08041.1
BC020199.1 AAH20199.1
CR533557.1 CAG38588.1
DC295791.1
DC299237.1
DC299993.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss SSU72 LOC102725121 PRKCZ SCNN1D ATAD3C LOC284600 HES4 CPTP GABRD CDK11B CFAP74 LOC100134822 FAM132A PUSL1 MIR6859-1 ATAD3A MIR6859-2 MIB2 TMEM240 MORN1 LOC102724312 GNB1 MMP23A DDX11L1 LOC107985728 LINC01128 LOC100132287 ANKRD65 DVL1 LOC100129534 LOC148413 MIR429 LINC00115 PLEKHN1 SLC35E2B MTND1P23 LOC100133331 MRPL20 MMP23B ATAD3B LOC105378949 TNFRSF4 LOC100288069 LOC105378591 CDK11A SLC35E2 PERM1 WASH7P FAM138A MIR6726 OR4F29 LOC100288175 FAAP20 KLHL17 TMEM88B TNFRSF18 FNDC10 MTND2P28 SKI LOC105378589 MIR6727 TTLL10-AS1 C1orf159 VWA1 MIR6723 ACAP3 TMEM52 MIR200B NOC2L LOC101928626 MIR200A LOC105378947 MIR1302-2 MXRA8 OR4F16 FAM41C SAMD11 SDF4 OR4F5 TAS1R3 LOC729737 LOC105378592 RNF223 CPSF3L ISG15 LINC01342 B3GALT6 CALML6 TTLL10 FAM87B LOC107985729 UBE2J2 AURKAIP1 AGRN LOC100506504 CCNL2 MIR6808 LOC107984841 LOC100130417 LOC100287934 NADK LOC105378948
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss CPTP TAS1R3 PUSL1 DVL1 ACAP3 MIR6808 CPSF3L MIR6727 MIR6726
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss CPTP TAS1R3 AURKAIP1 PUSL1 DVL1 ACAP3 MIR6808 CPSF3L SCNN1D MXRA8 MIR6727 MIR6726
dgv7n100 Chr.1:1306835 - 1379057 on Build GRCh38 Loss CPTP TAS1R3 AURKAIP1 PUSL1 DVL1 ACAP3 MIR6808 CPSF3L MXRA8 MIR6727
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss SDF4 TAS1R3 RNF223 CPSF3L SCNN1D TNFRSF18 LINC01342 B3GALT6 CPTP TNFRSF4 MIR6727 TTLL10-AS1 C1orf159 TTLL10 FAM132A UBE2J2 AURKAIP1 PUSL1 ACAP3 MIR200B MIR6726 MIR200A DVL1 MIR6808 MIR429 MXRA8
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss CPTP TAS1R3 PUSL1 DVL1 ACAP3 MIR6808 CPSF3L MXRA8 MIR6727
esv3584992 Chr.1:1314419 - 1330342 on Build GRCh38 Gain CPTP CPSF3L
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication SDF4 TAS1R3 RNF223 CPSF3L SCNN1D TNFRSF18 LINC01342 B3GALT6 CPTP TNFRSF4 MIR6727 TTLL10-AS1 C1orf159 TTLL10 FAM132A UBE2J2 PUSL1 ACAP3 MIR200B AGRN MIR6726 MIR200A LOC100288175 MIR429 LOC105378948
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion CPTP TAS1R3 AURKAIP1 PUSL1 DVL1 ACAP3 MIR6808 CPSF3L SCNN1D MXRA8 MIR6727 MIR6726
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss SSU72 SCNN1D TNFRSF18 ATAD3C LOC284600 FNDC10 HES4 CPTP CDK11B MIR6727 TTLL10-AS1 C1orf159 VWA1 FAM132A PUSL1 ACAP3 MIR200B NOC2L ATAD3A MIB2 TMEM240 MIR200A LOC102724312 MMP23A LOC107985728 LINC01128 ANKRD65 DVL1 LOC148413 MIR429 MXRA8 FAM41C LINC00115 SAMD11 SDF4 TAS1R3 PLEKHN1 SLC35E2B MRPL20 RNF223 MMP23B CPSF3L ATAD3B ISG15 LINC01342 B3GALT6 TNFRSF4 LOC100288069 CDK11A SLC35E2 TTLL10 FAM87B PERM1 LOC107985729 UBE2J2 AURKAIP1 AGRN MIR6726 LOC100288175 CCNL2 MIR6808 LOC100130417 KLHL17 LOC100287934 NADK TMEM88B LOC105378948
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss CPTP TAS1R3 PUSL1 DVL1 ACAP3 MIR6808 CPSF3L MXRA8 MIR6727
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion SDF4 TAS1R3 SSU72 MRPL20 MMP23B CPSF3L SCNN1D TNFRSF18 ATAD3C ATAD3B LINC01342 FNDC10 B3GALT6 CPTP TNFRSF4 CDK11B MIR6727 TTLL10-AS1 C1orf159 TTLL10 VWA1 FAM132A LOC107985729 UBE2J2 AURKAIP1 PUSL1 ACAP3 MIR200B ATAD3A MIB2 TMEM240 MIR6726 MIR200A LOC102724312 ANKRD65 DVL1 CCNL2 MIR6808 LOC148413 MIR429 MXRA8 TMEM88B
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain CPTP TAS1R3 PUSL1 DVL1 ACAP3 MIR6808 CPSF3L SCNN1D MXRA8 MIR6727 MIR6726
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss TAS1R3 UBE2J2 AURKAIP1 PUSL1 ACAP3 CPSF3L SCNN1D MIR6726 CPTP DVL1 MIR6808 MXRA8 MIR6727
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain SDF4 TAS1R3 PLEKHN1 MRPL20 RNF223 CPSF3L SCNN1D TNFRSF18 LOC284600 ISG15 LINC01342 HES4 B3GALT6 CPTP TNFRSF4 MIR6727 TTLL10-AS1 C1orf159 TTLL10 FAM132A PERM1 UBE2J2 AURKAIP1 PUSL1 ACAP3 MIR200B NOC2L AGRN MIR6726 MIR200A LOC107985728 LOC100288175 ANKRD65 DVL1 CCNL2 MIR6808 LOC148413 MIR429 LOC100130417 MXRA8 KLHL17 TMEM88B SAMD11 LOC105378948
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain SDF4 UBE2J2 PUSL1 ACAP3 CPSF3L MIR200B SCNN1D TNFRSF18 MIR6726 MIR200A B3GALT6 TNFRSF4 MIR429 MIR6727 TTLL10-AS1 TTLL10 FAM132A

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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