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See other CCHCR1 CNV Assays ›
Gene Symbol
CCHCR1
Assay Reference Genome
Location

Chr.6:31142673 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00893227_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54535

Gene Name:

 coiled-coil alpha-helical rod protein 1

Gene Aliases:

 C6orf18, HCR, SBP

Location:

 Chr.6:31142439-31158238 on Build GRCh38

Assay Gene Location:

 Within Exon 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CCHCR1 NM_001105563.1 18 2616 NP_001099033.1
NM_001105564.1 18 2724 NP_001099034.1
NM_019052.3 18 2391 NP_061925.2
XM_011514702.2 18 2650 XP_011513004.1
XM_011514703.1 19 2463 XP_011513005.1
XM_011514704.2 18 2252 XP_011513006.1
XM_011514705.1 18 2361 XP_011513007.1
XM_017010961.1 18 2758 XP_016866450.1
XM_017010962.1 19 2510 XP_016866451.1
XM_017010963.1 19 2624 XP_016866452.1
XM_017010964.1 18 2388 XP_016866453.1
XM_017010965.1 18 2450 XP_016866454.1
XM_017010966.1 18 2471 XP_016866455.1
XM_017010967.1 18 2574 XP_016866456.1
XM_017010968.1 18 2343 XP_016866457.1
XM_017010969.1 18 2250 XP_016866458.1
XM_017010970.1 17 2036 XP_016866459.1
AB029331.1 16 2212 BAA81890.1
AB112474.1 18 2347 BAD05130.1
AB112475.1 18 2698 BAD05131.1
AF216493.1 16 2212 AAF74221.1
AK000204.1 18 2347 BAA91007.1
AK000217.1 18 2348 BAA91016.1
AK000533.1 13 1463 BAA91236.1
AK289446.1 18 2339
AK295494.1 18 2369
AY029160.1 17 2268 AAK55759.1
BC110534.1 18 2434 AAI10535.1
BC110535.1 18 2547 AAI10536.1
CR457227.1 17 2268 CAG33508.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv525933 Chr.6:31113428 - 31174468 on Build GRCh38 Loss PSORS1C2 PSORS1C3 PSORS1C1 TCF19 CDSN POU5F1 CCHCR1
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion PPP1R10 SFTA2 RPP21 OR10C1 LOC105375014 LOC101929006 MUC21 MUC22 HLA-E HLA-L OR2J2 TCF19 OR12D3 GNL1 ZNRD1 OR11A1 HCG22 OR5V1 PSORS1C1 TRIM15 OR2H2 CDSN HCG8 RNF39 OR14J1 TRIM31-AS1 HLA-C MOG PPP1R18 LOC554223 TUBB HCG27 HCG4B ZFP57 SNORD32B ZNRD1ASP MICA TRIM39 HCG20 NRM DPCR1 MIR877 ABCF1 PRR3 IER3 IFITM4P OR12D2 HCG4 UBD PSORS1C2 MDC1 HLA-A ATAT1 HLA-F-AS1 MIR6891 DHX16 PPP1R11 LINC01015 FLOT1 PSORS1C3 C6orf136 HCG17 DDR1 HCG18 MDC1-AS1 TRIM10 MIR4640 GTF2H4 HLA-J HCG9 C6orf15 HLA-F TRIM26 VARS2 LINC00243 TRIM39-RPP21 GABBR1 HLA-K TRIM40 HLA-G POU5F1 TRIM31 OR2H1 HLA-B MAS1L CCHCR1 HLA-H MRPS18B
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss HCG20 NRM DPCR1 MIR877 PPP1R10 SFTA2 ABCF1 PRR3 IER3 LOC105375014 MUC21 PSORS1C2 MUC22 HLA-E MDC1 ATAT1 TCF19 DHX16 GNL1 FLOT1 PSORS1C3 HCG22 PSORS1C1 C6orf136 CDSN DDR1 MDC1-AS1 MIR4640 GTF2H4 HLA-C C6orf15 VARS2 LINC00243 PPP1R18 TUBB POU5F1 HCG27 CCHCR1 MRPS18B
nsv428140 Chr.6:31060513 - 31494329 on Build GRCh38 Gain+Loss PSORS1C3 PSORS1C1 CDSN PSORS1C2 HLA-C HCP5 C6orf15 LOC102725068 TCF19 HCG26 MIR6891 POU5F1 HCG27 HLA-B CCHCR1 MICA
nsv524061 Chr.6:31139310 - 31166166 on Build GRCh38 Loss PSORS1C2 PSORS1C1 TCF19 POU5F1 CCHCR1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion PPP1R10 SFTA2 RPP21 OR10C1 LOC105375014 LINC01556 LOC101929006 MUC21 MUC22 HLA-E OR2J3 HLA-L OR2J2 OR2B3 TCF19 HCG14 ZNF311 OR12D3 GNL1 ZNRD1 OR11A1 HCG22 OR5V1 PSORS1C1 TRIM15 OR2H2 CDSN HCG8 RNF39 OR14J1 HCG16 TRIM31-AS1 MOG PPP1R18 LOC554223 TUBB HCG27 HCG4B ZFP57 SNORD32B ZNRD1ASP TRIM39 HCG20 NRM DPCR1 MIR877 LOC100129636 ABCF1 PRR3 IER3 IFITM4P LINC00533 OR12D2 HCG4 UBD PSORS1C2 MDC1 HLA-A ATAT1 HLA-F-AS1 DHX16 PPP1R11 LINC01015 FLOT1 PSORS1C3 C6orf136 HCG17 TRIM27 LINC01623 DDR1 HCG18 MDC1-AS1 TRIM10 MIR4640 GTF2H4 HLA-J HCG9 C6orf15 HLA-F TRIM26 VARS2 LINC00243 TRIM39-RPP21 GABBR1 HLA-K TRIM40 HLA-G OR2W1 POU5F1 TRIM31 OR2H1 MAS1L CCHCR1 HLA-H MRPS18B
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion PPP1R10 SFTA2 RPP21 LOC105375014 MUC21 MUC22 HLA-E HLA-L TCF19 GNL1 ZNRD1 HCG22 PSORS1C1 TRIM15 CDSN HCG8 RNF39 TRIM31-AS1 HLA-C PPP1R18 LOC554223 TUBB HCG27 HCG4B ZNRD1ASP TRIM39 HCG20 NRM DPCR1 MIR877 ABCF1 PRR3 IER3 IFITM4P HCG4 PSORS1C2 MDC1 HLA-A ATAT1 HLA-F-AS1 DHX16 PPP1R11 FLOT1 PSORS1C3 C6orf136 HCG17 DDR1 HCG18 MDC1-AS1 TRIM10 MIR4640 GTF2H4 HLA-J HCG9 C6orf15 HLA-F TRIM26 VARS2 LINC00243 TRIM39-RPP21 HLA-K TRIM40 HLA-G POU5F1 TRIM31 CCHCR1 HLA-H MRPS18B
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss PPP1R10 SFTA2 RPP21 LOC105375014 MUC21 MUC22 HLA-E HLA-L TCF19 GNL1 ZNRD1 HCG22 PSORS1C1 TRIM15 CDSN HCG8 RNF39 TRIM31-AS1 HLA-C PPP1R18 TUBB HCG27 HCG4B ZNRD1ASP TRIM39 HCG20 NRM DPCR1 MIR877 ABCF1 PRR3 IER3 PSORS1C2 MDC1 HLA-A ATAT1 DHX16 PPP1R11 FLOT1 PSORS1C3 C6orf136 HCG17 DDR1 HCG18 MDC1-AS1 TRIM10 MIR4640 GTF2H4 HLA-J HCG9 C6orf15 TRIM26 VARS2 LINC00243 TRIM39-RPP21 HLA-K TRIM40 POU5F1 TRIM31 CCHCR1 HLA-H MRPS18B
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion HCG20 NRM DPCR1 MIR877 PPP1R10 SFTA2 ABCF1 PRR3 IER3 LOC105375014 MUC21 PSORS1C2 MUC22 HLA-E MDC1 ATAT1 TCF19 DHX16 GNL1 FLOT1 PSORS1C3 HCG22 PSORS1C1 C6orf136 CDSN DDR1 MDC1-AS1 MIR4640 GTF2H4 HLA-C C6orf15 VARS2 LINC00243 PPP1R18 TUBB POU5F1 HCG27 CCHCR1 MRPS18B
dgv1174e214 Chr.6:31139843 - 31176217 on Build GRCh38 Gain PSORS1C3 PSORS1C1 TCF19 POU5F1 CCHCR1
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication PPP1R10 SFTA2 RPP21 LOC105375014 MUC21 MUC22 HLA-E HLA-L TCF19 GNL1 ZNRD1 HCG22 PSORS1C1 TRIM15 CDSN HCG8 RNF39 TRIM31-AS1 HLA-C HCP5 LOC102725068 PPP1R18 TUBB HCG27 ZNRD1ASP MICA TRIM39 HCG20 NRM DPCR1 MIR877 ABCF1 PRR3 IER3 PSORS1C2 MDC1 ATAT1 MIR6891 DHX16 PPP1R11 FLOT1 PSORS1C3 C6orf136 HCG17 DDR1 HCG18 MDC1-AS1 TRIM10 MIR4640 GTF2H4 HLA-J C6orf15 TRIM26 VARS2 LINC00243 TRIM39-RPP21 HCG26 TRIM40 POU5F1 TRIM31 HLA-B CCHCR1 MRPS18B

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Function(s)


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