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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2597980 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00894423_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 12 1822 NP_001248745.1
NM_002613.4 14 2033 NP_002604.1
NM_031268.5 11 1652 NP_112558.2
XM_011522521.2 14 5721 XP_011520823.1
XM_011522523.2 11 5345 XP_011520825.1
XM_017023271.1 13 6101 XP_016878760.1
XM_017023272.1 13 2657 XP_016878761.1
XM_017023273.1 13 2366 XP_016878762.1
XM_017023274.1 14 2504 XP_016878763.1
XM_017023275.1 10 5726 XP_016878764.1
XM_017023276.1 10 1970 XP_016878765.1
XM_017023277.1 11 2068 XP_016878766.1
AK222581.1 BAD96301.1
BC006339.2 AAH06339.2
BC012103.1 AAH12103.1
BC033494.1 11 1565 AAH33494.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC100287175 WDR24 MIR4516 MIR1225 TBC1D24 JMJD8 LINC00235 MIR3176 MIR3677 HBM MIR940 HAGH LOC105371184 TPSG1 PIGQ E4F1 MIR3177 NME4 LINC00254 CRAMP1 RAB26 TPSB2 FAM234A ATP6V0C ABCA17P ABCA3 DDX11L10 MRPL28 SNHG19 PDPK1 BAIAP3 MIR3178 LUC7L SNHG9 RHOT2 RPL3L MIR5587 SLC9A3R2 SPSB3 MLST8 TPSAB1 LOC100134368 WFIKKN1 RGS11 CACNA1H SNORA64 RNPS1 TELO2 GNPTG WDR90 METRN SYNGR3 MEIOB EME2 MIR3180-5 RPUSD1 LOC652276 CLCN7 LOC106660606 TSR3 KCTD5 CAPN15 AMDHD2 CCNF CASKIN1 PRR35 C16orf59 BRICD5 NPW METTL26 NTHL1 ARHGDIG HN1L MPG MSRB1 POLR3K HS3ST6 IFT140 SSTR5-AS1 NTN3 MIR6511B1 ECI1 CCDC154 MIR4717 IGFALS MSLN NPRL3 PRSS27 RAB11FIP3 AXIN1 SSTR5 NDUFB10 GFER TRAF7 GNG13 HBQ1 MRPS34 HBZ LOC105371049 MIR6859-4 PRSS29P RAB40C UNKL MCRIP2 RHBDF1 RPL23AP5 PRR25 C16orf91 TPSD1 TMEM8A HAGHL LOC105371045 FAM173A PKD1 CCDC78 CEMP1 PDIA2 WASIR2 SNORA10 RNF151 NARFL NME3 LMF1-AS1 LOC107984876 FBXL16 SNORD60 MAPK8IP3 HBA1 SNRNP25 UBE2I SNORA78 NHLRC4 STUB1 LOC107987233 LOC105371038 TBL3 LOC729652 RHBDL1 LOC105371046 TMEM204 HBA2 NOXO1 FLJ42627 LOC105371047 MIR6767 LMF1 DNASE1L2 FAHD1 MIR6768 MIR662 ZNF598 CHTF18 LOC101929280 ERVK13-1 NUBP2 PGP DECR2 RPS2 PTX4 C1QTNF8 TSC2 SOX8
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss PRSS21 FLJ42627 KCTD5 TBC1D24 AMDHD2 SRRM2 PDPK1 PRSS41 MIR3178 PRSS27 ERVK13-1 SRRM2-AS1 CEMP1 ATP6V0C TCEB2 PRSS33 LOC652276
dgv2693n100 Chr.16:2593295 - 2676863 on Build GRCh38 Gain FLJ42627 ERVK13-1 PDPK1 LOC652276
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss FLJ42627 TBC1D24 ERVK13-1 AMDHD2 CEMP1 PDPK1 ATP6V0C MIR3178 LOC652276
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR6511B1 MIR4516 MIR1225 TBC1D24 SNORD60 ECI1 MIR3677 MIR940 MIR4717 E4F1 RNPS1 TRAF7 RAB26 LOC105371049 LOC729652 ATP6V0C ABCA17P MIR3180-5 LOC652276 LOC106660606 ABCA3 AMDHD2 CCNF MIR6767 SNHG19 CASKIN1 PDPK1 DNASE1L2 C16orf59 BRICD5 MIR6768 MIR3178 PKD1 PGP CEMP1 NTN3 MLST8 TSC2
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss FLJ42627 KCTD5 ERVK13-1 SRRM2-AS1 SRRM2 PDPK1 LOC652276 PRSS27
dgv780e212 Chr.16:2595646 - 2700191 on Build GRCh38 Gain FLJ42627 KCTD5 ERVK13-1 PDPK1 LOC652276

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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