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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2597980 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00894423_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 12 1822 NP_001248745.1
NM_002613.4 14 2033 NP_002604.1
NM_031268.5 11 1652 NP_112558.2
XM_011522521.2 14 5721 XP_011520823.1
XM_011522523.2 11 5345 XP_011520825.1
XM_017023271.1 13 6101 XP_016878760.1
XM_017023272.1 13 2657 XP_016878761.1
XM_017023273.1 13 2366 XP_016878762.1
XM_017023274.1 14 2504 XP_016878763.1
XM_017023275.1 10 5726 XP_016878764.1
XM_017023276.1 10 1970 XP_016878765.1
XM_017023277.1 11 2068 XP_016878766.1
AK222581.1 BAD96301.1
BC006339.2 AAH06339.2
BC012103.1 AAH12103.1
BC033494.1 11 1565 AAH33494.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication TSR3 ECI1 FLJ42627 BRICD5 RAB40C WASIR2 MIR6511B1 PGP UNKL RAB11FIP3 LOC652276 PTX4 WFIKKN1 RPS2 PIGQ LOC107984876 UBE2I DECR2 PDIA2 LOC100134368 HBZ MLST8 ATP6V0C PDPK1 SLC9A3R2 MSLN RNF151 RPL23AP5 LOC107987233 SPSB3 NPRL3 MRPL28 PRR25 JMJD8 POLR3K NME4 STUB1 AMDHD2 NHLRC4 TELO2 ABCA17P C1QTNF8 CEMP1 RNPS1 ZNF598 HS3ST6 MIR3177 LOC105371047 TPSAB1 MRPS34 ARHGDIG GFER SNRNP25 LINC00235 E4F1 TRAF7 HAGHL HBA1 NUBP2 HAGH RGS11 CCDC154 MIR940 CACNA1H HBM RPUSD1 LUC7L C16orf59 PRSS27 MIR5587 CCNF HN1L SSTR5-AS1 RHOT2 PRR35 MPG BAIAP3 AXIN1 PKD1 CASKIN1 DDX11L10 LOC105371045 MIR3176 MIR6859-4 TPSB2 MIR6767 GNPTG HBQ1 MIR4717 NTHL1 CAPN15 SNORD60 PRSS29P RPL3L MCRIP2 CCDC78 MIR3180-5 SOX8 CHTF18 CRAMP1 LOC105371049 CLCN7 RHBDL1 LOC105371038 SSTR5 SNORA78 SYNGR3 MIR6768 NPW TMEM204 MEIOB LMF1 MIR662 METRN LOC106660606 LOC105371046 IGFALS NDUFB10 TMEM8A FAM173A MAPK8IP3 DNASE1L2 RHBDF1 LMF1-AS1 C16orf91 EME2 KCTD5 MIR1225 SNORA10 IFT140 LOC105371184 NME3 TPSG1 METTL26 ABCA3 NARFL LOC729652 TSC2 WDR90 FBXL16 SNHG9 NTN3 LOC101929280 SNHG19 TPSD1 FAHD1 TBL3 MIR4516 HBA2 WDR24 ERVK13-1 MIR3677 RAB26 GNG13 MIR3178 TBC1D24 MSRB1 LOC100287175 LINC00254 FAM234A SNORA64 NOXO1
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss PRSS33 AMDHD2 FLJ42627 ERVK13-1 ATP6V0C MIR3178 SRRM2 TBC1D24 PRSS27 CEMP1 SRRM2-AS1 PDPK1 LOC652276 TCEB2 PRSS21 KCTD5 PRSS41
dgv2693n100 Chr.16:2593295 - 2676863 on Build GRCh38 Gain LOC652276 FLJ42627 ERVK13-1 PDPK1
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain LOC652276 PDPK1
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss LOC652276 AMDHD2 FLJ42627 ERVK13-1 ATP6V0C MIR3178 TBC1D24 CEMP1 PDPK1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain SNORD60 LOC729652 TSC2 AMDHD2 ECI1 BRICD5 MIR6511B1 ABCA17P MIR3180-5 PGP CEMP1 NTN3 RNPS1 LOC652276 SNHG19 LOC105371049 E4F1 TRAF7 MIR6768 MIR4516 MIR940 MLST8 MIR3677 ATP6V0C RAB26 MIR3178 TBC1D24 C16orf59 LOC106660606 PDPK1 CCNF DNASE1L2 PKD1 MIR1225 CASKIN1 MIR6767 ABCA3 MIR4717
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss LOC652276 KCTD5 FLJ42627 ERVK13-1 SRRM2 PRSS27 SRRM2-AS1 PDPK1
dgv780e212 Chr.16:2595646 - 2700191 on Build GRCh38 Gain LOC652276 KCTD5 FLJ42627 ERVK13-1 PDPK1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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