Hs00895962_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:844107 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2	1	314	XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2	1	321	XP_011518641.1
	XM_011520341.2			XP_011518643.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CHID1 PDDC1 PANO1 POLR2L AP2A2 RPLP2 CEND1 CD151 TSPAN4 SLC25A22 PIDD1 SNORA52 PNPLA2 LOC171391 CRACR2B
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 CHID1 POLR2L
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	ANO9 MUC5AC LOC101927503 PDDC1 PHRF1 PANO1 LOC101059906 PTDSS2 TMEM80 AP2A2 DEAF1 RPLP2 DRD4 TALDO1 CD151 MIR210HG RNH1 TSPAN4 MUC6 MUC2 PIDD1 TOLLIP-AS1 LRRC56 IRF7 MIR6744 HRAS SIGIRR LMNTD2 CHID1 EPS8L2 TOLLIP CDHR5 RASSF7 POLR2L CEND1 SLC25A22 SCT SNORA52 PNPLA2 LOC171391 LOC143666 CRACR2B MUC5B MIR210
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	TSPAN4 POLR2L
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	ANO9 PDDC1 PHRF1 B4GALNT4 PANO1 LOC101059906 PTDSS2 TMEM80 AP2A2 DEAF1 RPLP2 DRD4 TALDO1 CD151 MIR210HG RNH1 TSPAN4 PIDD1 LRRC56 IRF7 HRAS SIGIRR LMNTD2 CHID1 EPS8L2 CDHR5 RASSF7 POLR2L CEND1 PKP3 SLC25A22 SCT SNORA52 PNPLA2 LOC171391 LOC143666 CRACR2B MIR210
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	PDDC1 PHRF1 PANO1 LOC101059906 PTDSS2 TMEM80 DEAF1 RPLP2 DRD4 TALDO1 CD151 MIR210HG RNH1 TSPAN4 PIDD1 LRRC56 IRF7 HRAS LMNTD2 CHID1 EPS8L2 CDHR5 RASSF7 POLR2L CEND1 SLC25A22 SCT SNORA52 PNPLA2 LOC171391 LOC143666 CRACR2B MIR210
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CHID1 PDDC1 PANO1 POLR2L RPLP2 CEND1 CD151 TSPAN4 SLC25A22 PIDD1 SNORA52 PNPLA2 LOC171391 CRACR2B
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	ANO9 MUC5AC LOC101927503 PDDC1 PHRF1 B4GALNT4 PANO1 LOC101059906 PTDSS2 TMEM80 AP2A2 DEAF1 RPLP2 DRD4 TALDO1 CD151 MIR210HG RNH1 TSPAN4 MUC6 MUC2 PIDD1 LRRC56 IRF7 MIR6744 HRAS SIGIRR LMNTD2 CHID1 EPS8L2 TOLLIP CDHR5 RASSF7 POLR2L CEND1 PKP3 SLC25A22 SCT SNORA52 PNPLA2 LOC171391 LOC143666 CRACR2B MUC5B MIR210
nsv552888	Chr.11:841959 - 846738 on Build GRCh38	Loss	TSPAN4 POLR2L
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	TSPAN4 CHID1 PIDD1 SNORA52 PNPLA2 POLR2L AP2A2 CRACR2B RPLP2 CD151
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CHID1 PDDC1 PANO1 POLR2L RPLP2 CEND1 CD151 TSPAN4 SLC25A22 PIDD1 SNORA52 PNPLA2 LOC171391 CRACR2B
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	TSPAN4 CHID1 PNPLA2 POLR2L CRACR2B CD151
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CHID1 PDDC1 PANO1 POLR2L RPLP2 CEND1 TALDO1 CD151 TSPAN4 SLC25A22 PIDD1 SNORA52 PNPLA2 LOC171391 CRACR2B

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding