Hs00895962_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:844107 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2	1	314	XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2	1	321	XP_011518641.1
	XM_011520341.2			XP_011518643.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CD151 POLR2L RPLP2 CHID1 PANO1 TSPAN4 PNPLA2 CEND1 LOC171391 SNORA52 AP2A2 PIDD1 SLC25A22 PDDC1 CRACR2B
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	ANO9 MUC2 DEAF1 MUC5B IRF7 SCT TOLLIP TOLLIP-AS1 TMEM80 RPLP2 LOC101059906 MUC5AC PTDSS2 LMNTD2 TSPAN4 PNPLA2 MIR6744 TALDO1 CDHR5 MIR210HG RASSF7 CD151 RNH1 MUC6 HRAS POLR2L CHID1 MIR210 PANO1 LOC143666 EPS8L2 PHRF1 CEND1 LOC171391 LRRC56 SNORA52 AP2A2 PIDD1 SLC25A22 DRD4 SIGIRR PDDC1 CRACR2B LOC101927503
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 POLR2L CHID1
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	TSPAN4 POLR2L
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	ANO9 DEAF1 B4GALNT4 IRF7 SCT TMEM80 RPLP2 LOC101059906 PTDSS2 LMNTD2 TSPAN4 PNPLA2 TALDO1 CDHR5 MIR210HG RASSF7 CD151 RNH1 HRAS POLR2L CHID1 MIR210 PANO1 LOC143666 EPS8L2 PHRF1 CEND1 LOC171391 LRRC56 SNORA52 AP2A2 PIDD1 SLC25A22 DRD4 SIGIRR PDDC1 PKP3 CRACR2B
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	DEAF1 IRF7 SCT TMEM80 RPLP2 LOC101059906 PTDSS2 LMNTD2 TSPAN4 PNPLA2 TALDO1 CDHR5 MIR210HG RASSF7 CD151 RNH1 HRAS POLR2L CHID1 MIR210 PANO1 LOC143666 EPS8L2 PHRF1 CEND1 LOC171391 LRRC56 SNORA52 PIDD1 SLC25A22 DRD4 PDDC1 CRACR2B
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CD151 POLR2L RPLP2 CHID1 PANO1 TSPAN4 PNPLA2 CEND1 LOC171391 SNORA52 PIDD1 SLC25A22 PDDC1 CRACR2B
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	ANO9 MUC2 DEAF1 MUC5B B4GALNT4 IRF7 SCT TOLLIP TMEM80 RPLP2 LOC101059906 MUC5AC PTDSS2 LMNTD2 TSPAN4 PNPLA2 MIR6744 TALDO1 CDHR5 MIR210HG RASSF7 CD151 RNH1 MUC6 HRAS POLR2L CHID1 MIR210 PANO1 LOC143666 EPS8L2 PHRF1 CEND1 LOC171391 LRRC56 SNORA52 AP2A2 PIDD1 SLC25A22 DRD4 SIGIRR PDDC1 PKP3 CRACR2B LOC101927503
nsv552888	Chr.11:841959 - 846738 on Build GRCh38	Loss	TSPAN4 POLR2L
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	CD151 TSPAN4 PNPLA2 SNORA52 AP2A2 PIDD1 POLR2L RPLP2 CHID1 CRACR2B
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CD151 POLR2L RPLP2 CHID1 PANO1 TSPAN4 PNPLA2 CEND1 LOC171391 SNORA52 PIDD1 SLC25A22 PDDC1 CRACR2B
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CD151 TSPAN4 PNPLA2 POLR2L CHID1 CRACR2B
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	CD151 POLR2L RPLP2 CHID1 PANO1 TSPAN4 PNPLA2 CEND1 LOC171391 TALDO1 SNORA52 PIDD1 SLC25A22 PDDC1 CRACR2B

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding