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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2177935 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00900667_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 20 4943 NP_065815.1
AB037727.1 12 4080 BAA92544.1
AF451977.1 20 5009 AAL49758.1

Target Gene Details

Entrez Gene ID:

 84231

Gene Name:

 TNF receptor associated factor 7

Gene Aliases:

 RFWD1, RNF119

Location:

 Chr.16:2155752-2178129 on Build GRCh38

Assay Gene Location:

 Within Exon 21
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAF7 NM_032271.2 21 3473 NP_115647.2
XM_005255627.4 21 3513 XP_005255684.1
XM_011522700.1 21 3515 XP_011521002.1
AL136921.1 20 3369 CAB66855.1
AW245178.1 1 204
AY569455.1 20 3426 AAS68363.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication NPW UBE2I LOC107987233 LOC107984876 UNKL PRR25 E4F1 PDPK1 PIGQ NTHL1 AMDHD2 SSTR5-AS1 SSTR5 MIR3180-5 C1QTNF8 C16orf59 ATP6V0C NTN3 MIR662 LOC101929280 TELO2 TBL3 LOC100134368 IFT140 SYNGR3 SOX8 BAIAP3 SLC9A3R2 LOC105371047 RGS11 WFIKKN1 KCTD5 PGP METRN MIR3177 SPSB3 LOC105371049 TPSB2 MCRIP2 FAHD1 HS3ST6 HBQ1 SNORA64 LOC105371184 C16orf91 RPL3L AXIN1 RHOT2 MIR4516 RAB11FIP3 MLST8 MRPS34 MIR6859-4 LOC105371045 RHBDL1 TMEM8A CCDC78 LOC105371038 SNORA78 DDX11L10 HN1L SNORA10 NDUFB10 BRICD5 LINC00254 PRSS29P LOC105371046 NPRL3 WDR90 NME3 RPS2 FAM234A LOC652276 JMJD8 LUC7L HBZ TSC2 ABCA17P MSRB1 LOC106660606 TSR3 DNASE1L2 NME4 ARHGDIG MIR6768 NOXO1 EME2 ERVK13-1 PRR35 TBC1D24 MIR6767 LMF1 SNHG9 HBM TMEM204 TPSD1 GNPTG PKD1 CHTF18 CLCN7 PTX4 POLR3K NARFL FAM173A HAGHL CASKIN1 SNHG19 LINC00235 RAB26 CRAMP1 PRSS27 MIR3178 TPSAB1 GNG13 MIR5587 LMF1-AS1 DECR2 WDR24 MIR1225 FLJ42627 MIR6511B1 TPSG1 NUBP2 SNRNP25 ECI1 HBA1 RPUSD1 STUB1 RAB40C ZNF598 PDIA2 LOC100287175 TRAF7 MIR940 FBXL16 RPL23AP5 RNPS1 NHLRC4 MEIOB MPG WASIR2 RNF151 MIR3677 MIR4717 MIR3176 CEMP1 GFER SNORD60 HBA2 ABCA3 CACNA1H CAPN15 CCDC154 CCNF HAGH LOC729652 IGFALS MRPL28 MAPK8IP3 METTL26 MSLN RHBDF1
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss NPW ZNF598 MLST8 E4F1 TRAF7 NTHL1 RNPS1 MIR3180-5 TBL3 PKD1 BRICD5 GFER SYNGR3 SNORD60 CASKIN1 SNHG19 SLC9A3R2 RAB26 TSC2 PGP LOC105371049 MIR1225 DNASE1L2 MIR6511B1 ECI1 NOXO1 MIR4516
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss SNORD60 CASKIN1 SNHG19 MLST8 E4F1 TRAF7 RAB26 TSC2 MIR3180-5 PGP LOC105371049 MIR1225 DNASE1L2 MIR6511B1 ECI1 PKD1 BRICD5 MIR4516
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss SNORD60 CASKIN1 SNHG19 MLST8 E4F1 TRAF7 MIR940 RAB26 RNPS1 PGP LOC106660606 DNASE1L2 MIR3677 ECI1 BRICD5
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss LOC105371049 SNORD60 MIR1225 CASKIN1 SNHG19 MIR6511B1 TRAF7 RAB26 TSC2 PKD1 MIR3180-5 MIR4516
nsv827511 Chr.16:2177743 - 2178224 on Build GRCh38 Gain CASKIN1 TRAF7
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain CASKIN1 TRAF7
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MLST8 E4F1 PDPK1 TRAF7 MIR940 TBC1D24 AMDHD2 MIR6767 RNPS1 MIR3180-5 C16orf59 ATP6V0C NTN3 MIR3677 MIR4717 PKD1 BRICD5 CEMP1 LOC652276 SNORD60 CASKIN1 SNHG19 ABCA3 RAB26 TSC2 MIR3178 ABCA17P PGP LOC106660606 CCNF LOC105371049 LOC729652 MIR1225 DNASE1L2 MIR6511B1 ECI1 MIR6768 MIR4516
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss DNASE1L2 CASKIN1 MLST8 E4F1 TRAF7 MIR940 MIR3677 ECI1 RNPS1 BRICD5 PGP LOC106660606
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion SNORD60 CASKIN1 SNHG19 ABCA3 MLST8 E4F1 TRAF7 MIR940 RAB26 RNPS1 PGP LOC106660606 DNASE1L2 MIR3677 MIR4717 ECI1 BRICD5

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