Name: [Hs00907053_cn] [PHF1]
Creator: Thermo Fisher Scientific
Keywords: [PHF1] Assay, [PHD finger protein 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	5252
Gene Name:	PHD finger protein 1
Gene Aliases:	MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location:	Chr.6:33410751-33416453 on Build GRCh38
Assay Gene Location:	Overlaps Exon 11 - Intron 11

Gene Symbol	Transcript Accession	Protein ID
PHF1	NM_002636.4	NP_002627.1
	NM_024165.2	NP_077084.1
	NR_027692.1
	XM_011514662.1	XP_011512964.1
	XM_011514663.1	XP_011512965.1
	XM_011514664.1	XP_011512966.1
	XM_011514665.1	XP_011512967.1
	XM_011514666.1	XP_011512968.1
	XM_011514669.1	XP_011512971.1
	XM_011514670.2	XP_011512972.1
	XM_017010939.1	XP_016866428.1
	AF029678.1	AAC52062.1
	AF052205.1	AAC13273.1
	AK225913.1
	AK295412.1
	AK299162.1
	AK316499.1
	BC008834.2	AAH08834.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830637	Chr.6:33361588 - 33542927 on Build GRCh38	Loss	KIFC1 SYNGAP1 CUTA MIR5004 PHF1 ZBTB9
nsv830635	Chr.6:33270228 - 33446010 on Build GRCh38	Loss	MIR6834 PFDN6 RGL2 RPS18 B3GALT4 ZBTB22 KIFC1 CUTA MIR5004 DAXX TAPBP MIR6873 WDR46 VPS52 SYNGAP1 PHF1
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	PRRT1 C6orf48 HLA-DQB1-AS1 PSMB8 RGL2 APOM EGFL8 RXRB CUTA HLA-DPB1 DAXX HLA-DRB5 C6orf10 MIR6873 EHMT2 WDR46 LY6G6C FKBPL LOC101929163 ATP6V1G2 C4B SNORD52 TNXB LY6G6D PSMB8-AS1 DDX39B-AS1 ZBTB9 ZBTB12 HSPA1A HLA-DPA1 AGPAT1 HLA-DRB1 SNORD117 SKIV2L MIR4646 LOC100287329 MIR1236 AGER B3GALT4 MIR5004 C2-AS1 MIR6832 HLA-DMB HLA-DQA1 TAPBP HLA-DRA HLA-DQB1 LOC100507547 SLC44A4 ATF6B LTA DXO RNF5 LST1 PFDN6 MCCD1 SAPCD1 RPS18 CFB HLA-DQB2 NEU1 HLA-DOA KIFC1 HLA-DOB NFKBIL1 SLC39A7 PPT2-EGFL8 NOTCH4 MIR6721 ATP6V1G2-DDX39B HCP5 SNORD48 LOC100294145 MIR6834 CYP21A1P GPSM3 MIR6833 ZBTB22 HLA-DRB6 LY6G6F TAP1 STK19 VARS MICB SAPCD1-AS1 COL11A2 HLA-DQA2 C6orf25 PHF1 LSM2 PPP1R2P1 DDAH2 BAG6 HCG26 HSPA1B C4A LTB GPANK1 LY6G5C VPS52 PPT2 TNF PRRC2A HCG24 LY6G5B MIR3135B CLIC1 SNORD84 LOC102725068 NCR3 SNORA38 HSD17B8 PBX2 DDX39B LY6G6E SYNGAP1 MSH5-SAPCD1 BRD2 ABHD16A HCG23 TNXA TAP2 MSH5 BTNL2 PSMB9 C2 CYP21A2 MIR219A1 CSNK2B HLA-DPB2 HSPA1L RING1 HCG25 C6orf47 NELFE HLA-DMA AIF1 VWA7
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	PRRT1 C6orf48 HLA-DQB1-AS1 PSMB8 RGL2 APOM EGFL8 RXRB CUTA HLA-DPB1 DAXX HLA-DRB5 C6orf10 MIR6873 EHMT2 WDR46 LY6G6C FKBPL LOC101929163 ATP6V1G2 C4B SNORD52 TNXB LY6G6D PSMB8-AS1 DDX39B-AS1 ZBTB9 ZBTB12 HSPA1A HLA-DPA1 AGPAT1 HLA-DRB1 SNORD117 SKIV2L MIR4646 LOC100287329 MIR1236 AGER B3GALT4 MIR5004 C2-AS1 MIR6832 HLA-DMB HLA-DQA1 TAPBP HLA-DRA HLA-DQB1 LOC100507547 SLC44A4 ATF6B LTA DXO RNF5 LST1 PFDN6 MCCD1 SAPCD1 RPS18 CFB HLA-DQB2 NEU1 HLA-DOA KIFC1 HLA-DOB NFKBIL1 SLC39A7 PPT2-EGFL8 NOTCH4 MIR6721 ATP6V1G2-DDX39B HCP5 SNORD48 LOC100294145 MIR6834 CYP21A1P GPSM3 MIR6833 ZBTB22 HLA-DRB6 LY6G6F TAP1 STK19 VARS MICB SAPCD1-AS1 COL11A2 HLA-DQA2 C6orf25 PHF1 LSM2 PPP1R2P1 DDAH2 BAG6 HCG26 HSPA1B C4A LTB GPANK1 LY6G5C VPS52 PPT2 TNF PRRC2A HCG24 LY6G5B MIR3135B CLIC1 SNORD84 LOC102725068 NCR3 SNORA38 HSD17B8 PBX2 DDX39B LY6G6E SYNGAP1 MSH5-SAPCD1 BRD2 ABHD16A HCG23 TNXA TAP2 MSH5 BTNL2 PSMB9 C2 CYP21A2 MIR219A1 CSNK2B HLA-DPB2 HSPA1L RING1 HCG25 C6orf47 NELFE HLA-DMA AIF1 VWA7
nsv1119076	Chr.6:32595823 - 33480623 on Build GRCh38	Deletion	HCG24 MIR6834 HLA-DQB1-AS1 PSMB8 MIR3135B RGL2 B3GALT4 ZBTB22 RXRB CUTA MIR5004 HLA-DMB HLA-DPB1 HLA-DQA1 DAXX TAPBP HLA-DQB1 TAP1 MIR6873 HSD17B8 WDR46 COL11A2 HLA-DQA2 SYNGAP1 PHF1 PPP1R2P1 BRD2 PFDN6 PSMB8-AS1 RPS18 TAP2 HLA-DQB2 HLA-DOA KIFC1 HLA-DOB PSMB9 ZBTB9 HLA-DPA1 SLC39A7 MIR219A1 HLA-DPB2 VPS52 RING1 HCG25 HLA-DMA LOC100294145
nsv602832	Chr.6:33414464 - 33552444 on Build GRCh38	Loss	SYNGAP1 CUTA MIR5004 PHF1 ZBTB9