Name: [Hs00907053_cn] [PHF1]
Creator: Thermo Fisher Scientific
Keywords: [PHF1] Assay, [PHD finger protein 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	5252
Gene Name:	PHD finger protein 1
Gene Aliases:	MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location:	Chr.6:33410751-33416453 on Build GRCh38
Assay Gene Location:	Overlaps Exon 11 - Intron 11

Gene Symbol	Transcript Accession	Protein ID
PHF1	NM_002636.4	NP_002627.1
	NM_024165.2	NP_077084.1
	NR_027692.1
	XM_011514662.1	XP_011512964.1
	XM_011514663.1	XP_011512965.1
	XM_011514664.1	XP_011512966.1
	XM_011514665.1	XP_011512967.1
	XM_011514666.1	XP_011512968.1
	XM_011514669.1	XP_011512971.1
	XM_011514670.2	XP_011512972.1
	XM_017010939.1	XP_016866428.1
	AF029678.1	AAC52062.1
	AF052205.1	AAC13273.1
	AK225913.1
	AK295412.1
	AK299162.1
	AK316499.1
	BC008834.2	AAH08834.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830637	Chr.6:33361588 - 33542927 on Build GRCh38	Loss	PHF1 KIFC1 SYNGAP1 MIR5004 ZBTB9 CUTA
nsv830635	Chr.6:33270228 - 33446010 on Build GRCh38	Loss	KIFC1 TAPBP DAXX RPS18 MIR6834 CUTA ZBTB22 PHF1 SYNGAP1 WDR46 VPS52 PFDN6 B3GALT4 MIR6873 MIR5004 RGL2
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	CLIC1 MICB MIR6834 CFB MIR6833 VARS HLA-DQA1 CSNK2B HCG26 NFKBIL1 C2 LY6G6C LTA HLA-DRB5 HLA-DRB1 MIR6721 SAPCD1 LY6G5C ZBTB12 MSH5 DAXX HSPA1B PRRT1 HLA-DQB1-AS1 C6orf10 SKIV2L DDAH2 MIR3135B VWA7 PSMB8 RING1 PBX2 MSH5-SAPCD1 NCR3 TNXA COL11A2 HCP5 LOC100507547 C4B LOC100294145 ATF6B LTB HLA-DPB1 CYP21A2 SNORD48 B3GALT4 RGL2 MIR1236 SNORA38 SNORD117 MIR219A1 SLC39A7 LY6G6F EHMT2 SLC44A4 HCG23 HSD17B8 NEU1 HLA-DPA1 LOC101929163 MIR5004 HSPA1L RXRB HLA-DOA GPSM3 NELFE PPT2-EGFL8 TNXB TAP1 DDX39B-AS1 AGPAT1 HLA-DOB EGFL8 VPS52 ATP6V1G2-DDX39B BTNL2 LSM2 LY6G6E HLA-DRA C6orf25 TNF C6orf47 CUTA HLA-DPB2 LOC102725068 LOC100287329 HLA-DMB LY6G5B MIR6873 MIR6832 SAPCD1-AS1 DDX39B HSPA1A HLA-DQA2 GPANK1 HLA-DQB1 BAG6 TAPBP PSMB9 PPT2 STK19 HCG25 ABHD16A SNORD52 RPS18 ZBTB22 HLA-DQB2 PHF1 C4A AIF1 MIR4646 PFDN6 HLA-DMA TAP2 RNF5 ZBTB9 C2-AS1 FKBPL C6orf48 ATP6V1G2 LST1 KIFC1 CYP21A1P NOTCH4 PSMB8-AS1 PRRC2A MCCD1 HLA-DRB6 AGER APOM DXO HCG24 SYNGAP1 WDR46 SNORD84 PPP1R2P1 LY6G6D BRD2
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	CLIC1 MICB MIR6834 CFB MIR6833 VARS HLA-DQA1 CSNK2B HCG26 NFKBIL1 C2 LY6G6C LTA HLA-DRB5 HLA-DRB1 MIR6721 SAPCD1 LY6G5C ZBTB12 MSH5 DAXX HSPA1B PRRT1 HLA-DQB1-AS1 C6orf10 SKIV2L DDAH2 MIR3135B VWA7 PSMB8 RING1 PBX2 MSH5-SAPCD1 NCR3 TNXA COL11A2 HCP5 LOC100507547 C4B LOC100294145 ATF6B LTB HLA-DPB1 CYP21A2 SNORD48 B3GALT4 RGL2 MIR1236 SNORA38 SNORD117 MIR219A1 SLC39A7 LY6G6F EHMT2 SLC44A4 HCG23 HSD17B8 NEU1 HLA-DPA1 LOC101929163 MIR5004 HSPA1L RXRB HLA-DOA GPSM3 NELFE PPT2-EGFL8 TNXB TAP1 DDX39B-AS1 AGPAT1 HLA-DOB EGFL8 VPS52 ATP6V1G2-DDX39B BTNL2 LSM2 LY6G6E HLA-DRA C6orf25 TNF C6orf47 CUTA HLA-DPB2 LOC102725068 LOC100287329 HLA-DMB LY6G5B MIR6873 MIR6832 SAPCD1-AS1 DDX39B HSPA1A HLA-DQA2 GPANK1 HLA-DQB1 BAG6 TAPBP PSMB9 PPT2 STK19 HCG25 ABHD16A SNORD52 RPS18 ZBTB22 HLA-DQB2 PHF1 C4A AIF1 MIR4646 PFDN6 HLA-DMA TAP2 RNF5 ZBTB9 C2-AS1 FKBPL C6orf48 ATP6V1G2 LST1 KIFC1 CYP21A1P NOTCH4 PSMB8-AS1 PRRC2A MCCD1 HLA-DRB6 AGER APOM DXO HCG24 SYNGAP1 WDR46 SNORD84 PPP1R2P1 LY6G6D BRD2
nsv602832	Chr.6:33414464 - 33552444 on Build GRCh38	Loss	PHF1 SYNGAP1 MIR5004 ZBTB9 CUTA
nsv1119076	Chr.6:32595823 - 33480623 on Build GRCh38	Deletion	HLA-DQA2 RXRB HLA-DQB1 TAPBP PSMB9 HLA-DOA COL11A2 HCG25 RPS18 MIR6834 TAP1 LOC100294145 ZBTB22 HLA-DQB2 PHF1 HLA-DPB1 HLA-DOB VPS52 HLA-DQA1 PFDN6 B3GALT4 HLA-DMA TAP2 RGL2 ZBTB9 KIFC1 MIR219A1 PSMB8-AS1 SLC39A7 DAXX HSD17B8 CUTA HLA-DPB2 HLA-DQB1-AS1 HLA-DPA1 MIR3135B HCG24 SYNGAP1 HLA-DMB WDR46 PSMB8 MIR6873 MIR5004 PPP1R2P1 RING1 BRD2