Name: [Hs00922884_cn] [PHF1]
Creator: Thermo Fisher Scientific
Keywords: [PHF1] Assay, [PHD finger protein 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	5252
Gene Name:	PHD finger protein 1
Gene Aliases:	MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location:	Chr.6:33410751-33416453 on Build GRCh38
Assay Gene Location:	Overlaps Exon 8 - Intron 8

Gene Symbol	Transcript Accession	Protein ID
PHF1	NM_002636.4	NP_002627.1
	NM_024165.2	NP_077084.1
	NR_027692.1
	XM_011514662.1	XP_011512964.1
	XM_011514663.1	XP_011512965.1
	XM_011514664.1	XP_011512966.1
	XM_011514665.1	XP_011512967.1
	XM_011514666.1	XP_011512968.1
	XM_011514669.1	XP_011512971.1
	XM_011514670.2	XP_011512972.1
	XM_017010939.1	XP_016866428.1
	AF029678.1	AAC52062.1
	AF052205.1	AAC13273.1
	AK225913.1
	AK295412.1
	AK299162.1
	AK316499.1
	BC008834.2	AAH08834.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830637	Chr.6:33361588 - 33542927 on Build GRCh38	Loss	MIR5004 PHF1 CUTA SYNGAP1 ZBTB9 KIFC1
nsv830635	Chr.6:33270228 - 33446010 on Build GRCh38	Loss	RPS18 CUTA MIR6873 RGL2 VPS52 PFDN6 MIR5004 B3GALT4 MIR6834 PHF1 SYNGAP1 TAPBP KIFC1 DAXX WDR46 ZBTB22
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	C4A DXO SKIV2L HLA-DRA PSMB9 HLA-DPB1 LOC101929163 HLA-DOA MICB SNORD117 HLA-DPA1 HCG26 TAP1 PSMB8 SLC44A4 MIR6834 LY6G5B HCG23 HLA-DRB5 LY6G6D ATP6V1G2 CSNK2B NOTCH4 CYP21A1P NFKBIL1 RXRB CUTA C2-AS1 ATP6V1G2-DDX39B HLA-DOB GPANK1 B3GALT4 NELFE SAPCD1-AS1 DDAH2 KIFC1 APOM LY6G5C PPP1R2P1 LOC102725068 HLA-DQA2 HLA-DQB1-AS1 C6orf10 CFB C2 PRRC2A MSH5-SAPCD1 LTB VPS52 AGER LSM2 LY6G6C LY6G6E SYNGAP1 LOC100294145 TNXA ZBTB9 DAXX ABHD16A VWA7 NEU1 HSD17B8 AIF1 ATF6B SNORA38 C4B FKBPL CLIC1 TNXB TAP2 HLA-DPB2 LOC100287329 HLA-DRB1 PRRT1 MSH5 HLA-DMB LTA MIR3135B RING1 LY6G6F EHMT2 MIR6721 SAPCD1 PFDN6 MCCD1 HCG24 HCG25 ZBTB12 HCP5 GPSM3 BRD2 RPS18 SNORD52 RNF5 LOC100507547 HLA-DRB6 LST1 AGPAT1 HLA-DQB2 BAG6 SNORD48 C6orf25 HSPA1B TNF DDX39B-AS1 HLA-DMA BTNL2 MIR6873 EGFL8 HLA-DQA1 MIR6833 CYP21A2 COL11A2 MIR4646 PBX2 PPT2-EGFL8 HSPA1A SLC39A7 PSMB8-AS1 HLA-DQB1 MIR219A1 HSPA1L C6orf48 DDX39B WDR46 SNORD84 VARS RGL2 C6orf47 MIR5004 PHF1 PPT2 TAPBP NCR3 MIR6832 MIR1236 STK19 ZBTB22
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	C4A DXO SKIV2L HLA-DRA PSMB9 HLA-DPB1 LOC101929163 HLA-DOA MICB SNORD117 HLA-DPA1 HCG26 TAP1 PSMB8 SLC44A4 MIR6834 LY6G5B HCG23 HLA-DRB5 LY6G6D ATP6V1G2 CSNK2B NOTCH4 CYP21A1P NFKBIL1 RXRB CUTA C2-AS1 ATP6V1G2-DDX39B HLA-DOB GPANK1 B3GALT4 NELFE SAPCD1-AS1 DDAH2 KIFC1 APOM LY6G5C PPP1R2P1 LOC102725068 HLA-DQA2 HLA-DQB1-AS1 C6orf10 CFB C2 PRRC2A MSH5-SAPCD1 LTB VPS52 AGER LSM2 LY6G6C LY6G6E SYNGAP1 LOC100294145 TNXA ZBTB9 DAXX ABHD16A VWA7 NEU1 HSD17B8 AIF1 ATF6B SNORA38 C4B FKBPL CLIC1 TNXB TAP2 HLA-DPB2 LOC100287329 HLA-DRB1 PRRT1 MSH5 HLA-DMB LTA MIR3135B RING1 LY6G6F EHMT2 MIR6721 SAPCD1 PFDN6 MCCD1 HCG24 HCG25 ZBTB12 HCP5 GPSM3 BRD2 RPS18 SNORD52 RNF5 LOC100507547 HLA-DRB6 LST1 AGPAT1 HLA-DQB2 BAG6 SNORD48 C6orf25 HSPA1B TNF DDX39B-AS1 HLA-DMA BTNL2 MIR6873 EGFL8 HLA-DQA1 MIR6833 CYP21A2 COL11A2 MIR4646 PBX2 PPT2-EGFL8 HSPA1A SLC39A7 PSMB8-AS1 HLA-DQB1 MIR219A1 HSPA1L C6orf48 DDX39B WDR46 SNORD84 VARS RGL2 C6orf47 MIR5004 PHF1 PPT2 TAPBP NCR3 MIR6832 MIR1236 STK19 ZBTB22
nsv1119076	Chr.6:32595823 - 33480623 on Build GRCh38	Deletion	RING1 HLA-DQA2 PSMB9 HLA-DQB1-AS1 HLA-DPB1 HLA-DMA MIR6873 HLA-DOA HLA-DPA1 HLA-DQA1 TAP1 COL11A2 PSMB8 VPS52 PFDN6 HCG24 SLC39A7 PSMB8-AS1 MIR6834 HLA-DQB1 SYNGAP1 MIR219A1 LOC100294145 HCG25 ZBTB9 DAXX HSD17B8 WDR46 BRD2 RPS18 RXRB CUTA TAP2 HLA-DPB2 RGL2 HLA-DOB MIR5004 HLA-DMB B3GALT4 HLA-DQB2 PHF1 TAPBP MIR3135B KIFC1 PPP1R2P1 ZBTB22