Name: [Hs00922884_cn] [PHF1]
Creator: Thermo Fisher Scientific
Keywords: [PHF1] Assay, [PHD finger protein 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	5252
Gene Name:	PHD finger protein 1
Gene Aliases:	MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location:	Chr.6:33410751-33416453 on Build GRCh38
Assay Gene Location:	Overlaps Exon 8 - Intron 8

Gene Symbol	Transcript Accession	Protein ID
PHF1	NM_002636.4	NP_002627.1
	NM_024165.2	NP_077084.1
	NR_027692.1
	XM_011514662.1	XP_011512964.1
	XM_011514663.1	XP_011512965.1
	XM_011514664.1	XP_011512966.1
	XM_011514665.1	XP_011512967.1
	XM_011514666.1	XP_011512968.1
	XM_011514669.1	XP_011512971.1
	XM_011514670.2	XP_011512972.1
	XM_017010939.1	XP_016866428.1
	AF029678.1	AAC52062.1
	AF052205.1	AAC13273.1
	AK225913.1
	AK295412.1
	AK299162.1
	AK316499.1
	BC008834.2	AAH08834.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830637	Chr.6:33361588 - 33542927 on Build GRCh38	Loss	SYNGAP1 KIFC1 CUTA PHF1 MIR5004 ZBTB9
nsv830635	Chr.6:33270228 - 33446010 on Build GRCh38	Loss	B3GALT4 SYNGAP1 TAPBP PFDN6 RGL2 PHF1 MIR5004 RPS18 ZBTB22 KIFC1 VPS52 CUTA MIR6834 WDR46 MIR6873 DAXX
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	EGFL8 SNORA38 NELFE ABHD16A HCG23 TAP1 HSPA1A BAG6 C6orf25 HCG25 CUTA APOM CYP21A2 HCG26 SAPCD1 C4B TAPBP BRD2 NCR3 MIR4646 LOC101929163 TNXA CSNK2B C2-AS1 HLA-DPA1 LST1 RXRB MICB SNORD52 HLA-DOB VWA7 STK19 RGL2 PSMB9 MCCD1 GPSM3 HLA-DMB MSH5 ZBTB9 RPS18 C4A RING1 HLA-DRB1 DDX39B LY6G5B VPS52 DDAH2 SLC39A7 MIR6834 MIR219A1 MIR6873 LY6G6E C6orf47 LOC100507547 ATF6B DDX39B-AS1 MIR3135B SAPCD1-AS1 MIR5004 MSH5-SAPCD1 LY6G6D NEU1 PPT2-EGFL8 LY6G6F NOTCH4 WDR46 HLA-DRA LOC100294145 AGPAT1 PPT2 DAXX MIR6833 GPANK1 PBX2 HLA-DOA RNF5 MIR6721 AIF1 HSD17B8 TNF FKBPL PSMB8-AS1 PPP1R2P1 ATP6V1G2-DDX39B SLC44A4 SNORD84 HLA-DQA2 B3GALT4 NFKBIL1 SKIV2L HLA-DRB6 HLA-DRB5 LY6G6C HLA-DPB1 LSM2 C2 KIFC1 LOC100287329 SNORD117 PSMB8 HLA-DQB2 BTNL2 SYNGAP1 ATP6V1G2 TAP2 CFB HCG24 LY6G5C EHMT2 PRRT1 C6orf48 AGER CYP21A1P ZBTB22 HSPA1L MIR6832 PRRC2A MIR1236 HLA-DQB1 HLA-DQA1 LTA ZBTB12 COL11A2 VARS HLA-DPB2 SNORD48 PFDN6 C6orf10 LTB PHF1 CLIC1 HCP5 TNXB HSPA1B HLA-DMA HLA-DQB1-AS1 DXO LOC102725068
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	EGFL8 SNORA38 NELFE ABHD16A HCG23 TAP1 HSPA1A BAG6 C6orf25 HCG25 CUTA APOM CYP21A2 HCG26 SAPCD1 C4B TAPBP BRD2 NCR3 MIR4646 LOC101929163 TNXA CSNK2B C2-AS1 HLA-DPA1 LST1 RXRB MICB SNORD52 HLA-DOB VWA7 STK19 RGL2 PSMB9 MCCD1 GPSM3 HLA-DMB MSH5 ZBTB9 RPS18 C4A RING1 HLA-DRB1 DDX39B LY6G5B VPS52 DDAH2 SLC39A7 MIR6834 MIR219A1 MIR6873 LY6G6E C6orf47 LOC100507547 ATF6B DDX39B-AS1 MIR3135B SAPCD1-AS1 MIR5004 MSH5-SAPCD1 LY6G6D NEU1 PPT2-EGFL8 LY6G6F NOTCH4 WDR46 HLA-DRA LOC100294145 AGPAT1 PPT2 DAXX MIR6833 GPANK1 PBX2 HLA-DOA RNF5 MIR6721 AIF1 HSD17B8 TNF FKBPL PSMB8-AS1 PPP1R2P1 ATP6V1G2-DDX39B SLC44A4 SNORD84 HLA-DQA2 B3GALT4 NFKBIL1 SKIV2L HLA-DRB6 HLA-DRB5 LY6G6C HLA-DPB1 LSM2 C2 KIFC1 LOC100287329 SNORD117 PSMB8 HLA-DQB2 BTNL2 SYNGAP1 ATP6V1G2 TAP2 CFB HCG24 LY6G5C EHMT2 PRRT1 C6orf48 AGER CYP21A1P ZBTB22 HSPA1L MIR6832 PRRC2A MIR1236 HLA-DQB1 HLA-DQA1 LTA ZBTB12 COL11A2 VARS HLA-DPB2 SNORD48 PFDN6 C6orf10 LTB PHF1 CLIC1 HCP5 TNXB HSPA1B HLA-DMA HLA-DQB1-AS1 DXO LOC102725068
nsv1119076	Chr.6:32595823 - 33480623 on Build GRCh38	Deletion	HLA-DOA SYNGAP1 TAP2 RGL2 PSMB9 HCG24 HLA-DMB TAP1 ZBTB9 HSD17B8 RPS18 RING1 ZBTB22 PSMB8-AS1 VPS52 HCG25 CUTA SLC39A7 HLA-DQB1 PPP1R2P1 MIR6834 HLA-DQA1 MIR219A1 MIR6873 COL11A2 HLA-DQA2 B3GALT4 HLA-DPB2 TAPBP PFDN6 BRD2 MIR3135B PHF1 MIR5004 HLA-DPB1 HLA-DMA KIFC1 HLA-DQB1-AS1 PSMB8 WDR46 HLA-DPA1 HLA-DQB2 RXRB LOC100294145 DAXX HLA-DOB