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See other SIGIRR CNV Assays ›
Gene Symbol
SIGIRR
Assay Reference Genome
Location

Chr.11:408738 on build GRCh38
Cytoband
11p15.5
Assay ID Hs00923695_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 59307

Gene Name:

 single Ig and TIR domain containing

Gene Aliases:

 IL-1R8, TIR8

Location:

 Chr.11:405716-417454 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SIGIRR NM_001135053.1 NP_001128525.1
NM_001135054.1 NP_001128526.1
NM_021805.2 NP_068577.2
XM_005253044.2 XP_005253101.1
XM_005253045.1 XP_005253102.1
XM_005253046.1 XP_005253103.1
XM_005253048.4 XP_005253105.1
XM_017018099.1 XP_016873588.1
XM_017018100.1 XP_016873589.1
AK025099.1 BAB15066.1
AK093427.1
AK172830.1 BAD18795.1
AY358342.1 AAQ88708.1
BC003591.1 AAH03591.1
BC025953.1 AAH25953.1
BC106007.1 AAI06008.1
CR457338.1 CAG33619.1
DA963481.1
DB112269.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv527327 Chr.11:295343 - 620599 on Build GRCh38 Loss IFITM1 SIGIRR B4GALNT4 MIR210HG LOC101059906 IRF7 CDHR5 MIR210 LRRC56 PGGHG RASSF7 HRAS PTDSS2 IFITM2 LMNTD2 LOC143666 IFITM3 IFITM5 PHRF1 RNH1 ANO9 PKP3
nsv467633 Chr.11:366710 - 432436 on Build GRCh38 Loss SIGIRR B4GALNT4 ANO9 PKP3
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss LOC171391 CD151 MUC5AC MIR210HG LOC101059906 CEND1 EPS8L2 TSPAN4 PIDD1 TMEM80 CHID1 SCT MIR210 SNORA52 RASSF7 HRAS DEAF1 PTDSS2 DRD4 LMNTD2 LOC143666 TOLLIP PNPLA2 POLR2L MUC2 RNH1 SIGIRR MIR6744 TALDO1 SLC25A22 B4GALNT4 LOC101927503 IRF7 CDHR5 RPLP2 CRACR2B AP2A2 LRRC56 MUC6 MUC5B PANO1 PHRF1 PDDC1 ANO9 PKP3
nsv552770 Chr.11:356090 - 444628 on Build GRCh38 Gain SIGIRR B4GALNT4 ANO9 PKP3
nsv951268 Chr.11:368601 - 503700 on Build GRCh38 Deletion SIGIRR PTDSS2 B4GALNT4 RNH1 ANO9 PKP3
dgv1012n100 Chr.11:198510 - 427836 on Build GRCh38 Gain RIC8A IFITM1 SIGIRR B4GALNT4 NLRP6 BET1L PGGHG SIRT3 IFITM2 IFITM3 PSMD13 ODF3 IFITM5 MIR6743 ANO9 PKP3
nsv1159790 Chr.11:340219 - 491334 on Build GRCh38 Deletion SIGIRR PTDSS2 B4GALNT4 ANO9 PKP3
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion LOC171391 CD151 MIR210HG LOC101059906 CEND1 EPS8L2 TSPAN4 PIDD1 TMEM80 CHID1 SCT MIR210 SNORA52 RASSF7 HRAS DEAF1 PTDSS2 DRD4 LMNTD2 LOC143666 PNPLA2 POLR2L RNH1 SIGIRR TALDO1 SLC25A22 B4GALNT4 IRF7 CDHR5 RPLP2 CRACR2B AP2A2 LRRC56 PANO1 PHRF1 PDDC1 ANO9 PKP3

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More Information


Additional Information:

For this assay, SNP(s) [rs113922210] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

transmembrane signal receptor

Gene Ontology Categories:

Function(s) Process(es)


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