Hs00924879_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137031210 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2			NP_997394.1
	AK124899.1			BAC85986.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3	2	1378	NP_004470.1
	AK313124.1	2	1012
	BC074746.2	2	554	AAH74746.2
	BC086312.1	2	1378	AAH86312.1
	U08112.1	2	666	AAA56869.1
	U11282.1	2	666	AAA20468.1
	X78031.1	2	651	CAA54962.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	CLIC3 C9orf142 SAPCD2 PTGDS TMEM210 C9orf139 ABCA2 LRRC26 NPDC1 UAP1L1 MIR3621 MAN1B1 LCNL1 ENTPD2 FUT7 GRIN1 PRR31 LOC101930307 DPP7 MAN1B1-AS1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	NDOR1 CLIC3 SAPCD2 MIR4479 PTGDS LRRC26 FAM166A STPG3 RNF208 MIR3621 TRAF2 TUBB4B PNPLA7 CYSRT1 NSMF TMEM210 NRARP CCDC183-AS1 MAN1B1 PHPT1 ENTPD2 GRIN1 SLC34A3 NOXA1 C8G C9orf142 NPDC1 MAMDC4 LCN12 RNF224 FUT7 PRR31 TMEM203 DPP7 C9orf172 CCDC183 FBXW5 NELFB MAN1B1-AS1 ENTPD8 C9orf139 ABCA2 EDF1 UAP1L1 ANAPC2 RABL6 MIR7114 SSNA1 TPRN LCNL1 MIR4292 TOR4A EXD3 C9orf173-AS1 LOC101930307
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	C8G CLIC3 C9orf142 SAPCD2 PTGDS C9orf139 ABCA2 NPDC1 UAP1L1 MAN1B1 LCNL1 ENTPD2 LCN12 FUT7 PRR31 LOC101930307 DPP7 MAN1B1-AS1
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	NOTCH1 LOC100128593 CLIC3 SAPCD2 MIR4479 PTGDS LRRC26 SNHG7 MIR4674 MIR3621 TRAF2 SNORA17A INPP5E DNLZ NALT1 AGPAT2 EGFL7 TMEM210 CCDC183-AS1 HSPC324 MAN1B1 PHPT1 ENTPD2 SDCCAG3 PMPCA GRIN1 C8G C9orf142 NPDC1 LCN10 CARD9 MAMDC4 MIR4673 LCN15 C9orf163 LCN12 FUT7 PRR31 DPP7 C9orf172 CCDC183 SEC16A FBXW5 MAN1B1-AS1 SNORA17B LINC01451 TMEM141 C9orf139 ABCA2 MIR6722 EDF1 UAP1L1 RABL6 FAM69B MIR126 LCNL1 LCN8 MIR4292 SNAPC4 LOC101930307 LCN6
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	SAPCD2 TMEM210 C9orf139 LRRC26 NPDC1 UAP1L1 ANAPC2 SSNA1 MIR3621 MAN1B1 ENTPD2 FUT7 GRIN1 LOC101930307 DPP7 MAN1B1-AS1
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	LOC100128593 NDOR1 CLIC3 SAPCD2 MIR4479 PTGDS LRRC26 SNHG7 FAM166A STPG3 RNF208 MIR3621 TRAF2 SNORA17A TUBB4B CYSRT1 AGPAT2 EGFL7 TMEM210 NRARP CCDC183-AS1 HSPC324 MAN1B1 PHPT1 ENTPD2 GRIN1 SLC34A3 C8G C9orf142 NPDC1 LCN10 MAMDC4 LCN15 LCN12 RNF224 FUT7 PRR31 TMEM203 DPP7 C9orf172 CCDC183 FBXW5 NELFB MAN1B1-AS1 SNORA17B LINC01451 TMEM141 C9orf139 ABCA2 MIR6722 EDF1 UAP1L1 ANAPC2 RABL6 SSNA1 FAM69B TPRN MIR126 LCNL1 LCN8 MIR4292 TOR4A EXD3 C9orf173-AS1 LOC101930307 LCN6
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	ENTPD2 FUT7 C9orf139 ABCA2 NPDC1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity