Hs00938393_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140848521 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	750	NP_054724.1
	NM_031857.1	1	750	NP_114063.1
	AB002343.1	1	750
	AF152317.1			AAD43711.1
	AF152487.1			AAD43748.1
	AJ007610.1	1	1059	CAC22257.1
	AK314303.1	1	188
	BC104802.1	1	119	AAI04803.1
	BC104804.1	1	119	AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv964953	Chr.5:140848155 - 140850849 on Build GRCh38	Duplication	PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
nsv437955	Chr.5:140848387 - 140850586 on Build GRCh38	Loss	PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
nsv599839	Chr.5:140837299 - 140848579 on Build GRCh38	Gain	PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGB1 PCDHGA7 PCDHB6 PCDHB16 PCDHGA9 PCDHB13 PCDHGB8P PCDHA4 PCDHGA1 PCDHGA4 PCDHGB5 SLC25A2 PCDHB18P PCDHB10 PCDHA12 LOC101926905 PCDHB11 PCDHB12 PCDHB8 PCDHA8 PCDHB14 PCDHGA2 PCDHA1 PCDHB17P PCDHGB4 PCDHAC2 PCDHA6 PCDHB5 PCDHA3 PCDHGB6 PCDHA10 PCDHGB7 PCDHB7 PCDHA7 PCDHB19P PCDHB4 PCDHGA6 PCDHB2 PCDHGA3 PCDHB15 PCDHB9 PCDHGA11 PCDHGB2 PCDHA5 TAF7 PCDHA13 PCDHB1 PCDHGB3 PCDHGA12 PCDHB3 PCDHA2 PCDHGA10 PCDHGA8 PCDHGA5 PCDHA9 PCDHAC1 PCDHA11
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA11 PCDHA3
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA11 PCDHA3
nsv1133616	Chr.5:140842215 - 140848715 on Build GRCh38	Deletion	PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
nsv515909	Chr.5:140848414 - 140852761 on Build GRCh38	Loss	PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
nsv442962	Chr.5:140844251 - 140864171 on Build GRCh38	Loss	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
dgv971n67	Chr.5:140842564 - 140859431 on Build GRCh38	Loss	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
dgv724n27	Chr.5:140847633 - 140852761 on Build GRCh38	Loss	PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA10 HARS PCDHA5 PCDHA8 PCDHA7 VTRNA1-2 PCDHA4 HARS2 PCDHA1 VTRNA1-3 PCDHA2 VTRNA1-1 PCDHA9 PCDHA6 PCDHA11 PCDHA3 ZMAT2
esv2861013	Chr.5:140834461 - 140848573 on Build GRCh38	Duplication	PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
dgv10094n54	Chr.5:140846323 - 140860465 on Build GRCh38	Loss	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
dgv10092n54	Chr.5:140835344 - 140850785 on Build GRCh38	Loss	PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA10 PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3
dgv1044e199	Chr.5:140843360 - 140849907 on Build GRCh38	Deletion	PCDHA1 PCDHA2 PCDHA5 PCDHA8 PCDHA7 PCDHA4 PCDHA9 PCDHA6 PCDHA3

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding