Hs00938393_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140848521 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	750	NP_054724.1
	NM_031857.1	1	750	NP_114063.1
	AB002343.1	1	750
	AF152317.1			AAD43711.1
	AF152487.1			AAD43748.1
	AJ007610.1	1	1059	CAC22257.1
	AK314303.1	1	188
	BC104802.1	1	119	AAI04803.1
	BC104804.1	1	119	AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv437955	Chr.5:140848387 - 140850586 on Build GRCh38	Loss	PCDHA8 PCDHA6 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
nsv964953	Chr.5:140848155 - 140850849 on Build GRCh38	Duplication	PCDHA8 PCDHA6 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
nsv599839	Chr.5:140837299 - 140848579 on Build GRCh38	Gain	PCDHA8 PCDHA6 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA8 PCDHA6 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGA11 PCDHGB2 PCDHB4 PCDHB11 PCDHB8 PCDHGB6 PCDHA7 PCDHB3 PCDHGB5 PCDHA1 PCDHA13 PCDHA8 PCDHGB7 PCDHGA12 PCDHB6 TAF7 PCDHA5 PCDHGA10 PCDHB5 PCDHB7 PCDHB14 PCDHA2 PCDHAC2 PCDHB10 PCDHGA8 PCDHGA2 PCDHB17P PCDHAC1 PCDHGB8P PCDHGA7 PCDHA10 PCDHGA5 PCDHB19P PCDHB12 PCDHB18P PCDHGA9 PCDHGB3 PCDHA11 PCDHB1 PCDHB15 PCDHA4 PCDHGA4 PCDHGA6 PCDHA6 PCDHB2 PCDHGA1 PCDHB13 PCDHB16 PCDHGA3 PCDHGB4 LOC101926905 PCDHA3 PCDHB9 PCDHA9 SLC25A2 PCDHA12 PCDHGB1
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA11 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
nsv1133616	Chr.5:140842215 - 140848715 on Build GRCh38	Deletion	PCDHA8 PCDHA6 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
nsv515909	Chr.5:140848414 - 140852761 on Build GRCh38	Loss	PCDHA8 PCDHA6 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
esv2421858	Chr.5:140844251 - 140857963 on Build GRCh38	Deletion	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
dgv10096n54	Chr.5:140847633 - 140852761 on Build GRCh38	Loss	PCDHA8 PCDHA6 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA8 PCDHA6 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA8 PCDHA6 PCDHA10 ZMAT2 HARS VTRNA1-2 PCDHA5 PCDHA2 PCDHA3 PCDHA11 HARS2 PCDHA9 PCDHA7 PCDHA1 VTRNA1-1 PCDHA4 VTRNA1-3
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
esv2861013	Chr.5:140834461 - 140848573 on Build GRCh38	Duplication	PCDHA8 PCDHA6 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
esv3890744	Chr.5:140846323 - 140857963 on Build GRCh38	Loss	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
dgv10092n54	Chr.5:140835344 - 140850785 on Build GRCh38	Loss	PCDHA8 PCDHA6 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA8 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4
dgv1044e199	Chr.5:140843360 - 140849907 on Build GRCh38	Deletion	PCDHA8 PCDHA6 PCDHA2 PCDHA3 PCDHA5 PCDHA9 PCDHA7 PCDHA1 PCDHA4

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding