Name: [Hs00940577_cn] [PHF1]
Creator: Thermo Fisher Scientific
Keywords: [PHF1] Assay, [PHD finger protein 1] Assay

Genomic Map

LOADING...

×

Back To Top

Assay Details

Target Gene Details

Entrez Gene ID:	5252
Gene Name:	PHD finger protein 1
Gene Aliases:	MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location:	Chr.6:33410751-33416453 on Build GRCh38
Assay Gene Location:	Overlaps Exon 5 - Intron 5

Gene Symbol	Transcript Accession	Protein ID
PHF1	NM_002636.4	NP_002627.1
	NM_024165.2	NP_077084.1
	NR_027692.1
	XM_011514662.1	XP_011512964.1
	XM_011514663.1	XP_011512965.1
	XM_011514664.1	XP_011512966.1
	XM_011514665.1	XP_011512967.1
	XM_011514666.1	XP_011512968.1
	XM_011514669.1	XP_011512971.1
	XM_011514670.2	XP_011512972.1
	XM_017010939.1	XP_016866428.1
	AF029678.1	AAC52062.1
	AF052205.1	AAC13273.1
	AK225913.1
	AK295412.1
	AK299162.1
	AK316499.1
	BC008834.2	AAH08834.1
	DA065298.1
	DA872118.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830637	Chr.6:33361588 - 33542927 on Build GRCh38	Loss	PHF1 KIFC1 ZBTB9 CUTA SYNGAP1 MIR5004
nsv830635	Chr.6:33270228 - 33446010 on Build GRCh38	Loss	PHF1 KIFC1 B3GALT4 DAXX WDR46 RPS18 RGL2 CUTA VPS52 TAPBP PFDN6 ZBTB22 MIR6873 SYNGAP1 MIR5004 MIR6834
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	HCG26 HCG25 BTNL2 LTA LST1 HLA-DMA RGL2 HLA-DQB2 HLA-DRB6 C4A MIR6721 PPT2 MIR6833 TAPBP HLA-DMB LY6G5B HLA-DPA1 LSM2 SLC44A4 CYP21A1P TAP1 C6orf47 LOC102725068 KIFC1 HSD17B8 ZBTB9 WDR46 EGFL8 SNORD84 SLC39A7 HLA-DQB1-AS1 HLA-DQA2 C2 HLA-DPB2 PSMB8-AS1 C6orf48 PPT2-EGFL8 C6orf10 AGER MIR6873 HSPA1L PSMB9 SYNGAP1 SNORD48 PHF1 EHMT2 C4B AGPAT1 SKIV2L B3GALT4 COL11A2 DXO GPSM3 MICB VARS HLA-DQA1 STK19 CFB PSMB8 ZBTB22 DDX39B C2-AS1 LY6G6E MIR4646 NEU1 TNXA ZBTB12 APOM ATP6V1G2-DDX39B LY6G6C CSNK2B LY6G5C MIR3135B HLA-DOB ABHD16A PFDN6 HSPA1B MCCD1 HLA-DRA ATF6B RXRB TNF FKBPL TNXB HLA-DRB1 PRRC2A RING1 AIF1 CUTA SNORA38 CLIC1 MSH5 LOC100287329 HSPA1A C6orf25 NOTCH4 PRRT1 MIR5004 GPANK1 BAG6 VWA7 LOC100294145 DAXX MIR1236 SNORD117 RPS18 ATP6V1G2 DDAH2 TAP2 RNF5 HCG23 CYP21A2 LOC101929163 NELFE HLA-DQB1 NFKBIL1 BRD2 MIR6832 PBX2 LY6G6D HLA-DOA MIR219A1 SAPCD1 LOC100507547 HCP5 LTB PPP1R2P1 HCG24 SAPCD1-AS1 NCR3 LY6G6F SNORD52 HLA-DPB1 HLA-DRB5 MSH5-SAPCD1 VPS52 MIR6834 DDX39B-AS1
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	HCG26 HCG25 BTNL2 LTA LST1 HLA-DMA RGL2 HLA-DQB2 HLA-DRB6 C4A MIR6721 PPT2 MIR6833 TAPBP HLA-DMB LY6G5B HLA-DPA1 LSM2 SLC44A4 CYP21A1P TAP1 C6orf47 LOC102725068 KIFC1 HSD17B8 ZBTB9 WDR46 EGFL8 SNORD84 SLC39A7 HLA-DQB1-AS1 HLA-DQA2 C2 HLA-DPB2 PSMB8-AS1 C6orf48 PPT2-EGFL8 C6orf10 AGER MIR6873 HSPA1L PSMB9 SYNGAP1 SNORD48 PHF1 EHMT2 C4B AGPAT1 SKIV2L B3GALT4 COL11A2 DXO GPSM3 MICB VARS HLA-DQA1 STK19 CFB PSMB8 ZBTB22 DDX39B C2-AS1 LY6G6E MIR4646 NEU1 TNXA ZBTB12 APOM ATP6V1G2-DDX39B LY6G6C CSNK2B LY6G5C MIR3135B HLA-DOB ABHD16A PFDN6 HSPA1B MCCD1 HLA-DRA ATF6B RXRB TNF FKBPL TNXB HLA-DRB1 PRRC2A RING1 AIF1 CUTA SNORA38 CLIC1 MSH5 LOC100287329 HSPA1A C6orf25 NOTCH4 PRRT1 MIR5004 GPANK1 BAG6 VWA7 LOC100294145 DAXX MIR1236 SNORD117 RPS18 ATP6V1G2 DDAH2 TAP2 RNF5 HCG23 CYP21A2 LOC101929163 NELFE HLA-DQB1 NFKBIL1 BRD2 MIR6832 PBX2 LY6G6D HLA-DOA MIR219A1 SAPCD1 LOC100507547 HCP5 LTB PPP1R2P1 HCG24 SAPCD1-AS1 NCR3 LY6G6F SNORD52 HLA-DPB1 HLA-DRB5 MSH5-SAPCD1 VPS52 MIR6834 DDX39B-AS1
nsv1119076	Chr.6:32595823 - 33480623 on Build GRCh38	Deletion	RXRB HCG25 PHF1 B3GALT4 BRD2 HLA-DMA RGL2 RING1 COL11A2 CUTA HLA-DQB2 HLA-DOA HLA-DQA1 MIR219A1 TAPBP HLA-DMB PSMB8 ZBTB22 PPP1R2P1 HLA-DPA1 HCG24 MIR5004 TAP1 KIFC1 HSD17B8 LOC100294145 DAXX ZBTB9 WDR46 RPS18 TAP2 SLC39A7 HLA-DQB1-AS1 HLA-DQA2 MIR3135B HLA-DPB1 HLA-DPB2 PSMB8-AS1 HLA-DOB VPS52 PFDN6 MIR6873 PSMB9 SYNGAP1 MIR6834 HLA-DQB1