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See other PHF1 CNV Assays ›
Gene Symbol
PHF1
Assay Reference Genome
Location

Chr.6:33412751 on build GRCh38
Cytoband
6p21.32
Assay ID Hs00940577_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 5252

Gene Name:

 PHD finger protein 1

Gene Aliases:

 MTF2L2, PCL1, PHF2, TDRD19C, hPHF1

Location:

 Chr.6:33410751-33416453 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 5 - Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PHF1 NM_002636.4 NP_002627.1
NM_024165.2 NP_077084.1
NR_027692.1
XM_011514662.1 XP_011512964.1
XM_011514663.1 XP_011512965.1
XM_011514664.1 XP_011512966.1
XM_011514665.1 XP_011512967.1
XM_011514666.1 XP_011512968.1
XM_011514669.1 XP_011512971.1
XM_011514670.2 XP_011512972.1
XM_017010939.1 XP_016866428.1
AF029678.1 AAC52062.1
AF052205.1 AAC13273.1
AK225913.1
AK295412.1
AK299162.1
AK316499.1
BC008834.2 AAH08834.1
DA065298.1
DA872118.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss ZBTB9 MIR5004 SYNGAP1 CUTA KIFC1 PHF1
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss MIR6834 ZBTB22 TAPBP SYNGAP1 CUTA RGL2 KIFC1 WDR46 PHF1 B3GALT4 MIR5004 PFDN6 VPS52 MIR6873 RPS18 DAXX
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion CYP21A1P LOC100294145 PBX2 HLA-DOA LY6G6F RXRB DDAH2 SNORA38 FKBPL PHF1 DXO SNORD48 AGPAT1 HLA-DRB6 SNORD117 MCCD1 MIR6873 PRRC2A DAXX COL11A2 SLC39A7 MIR219A1 NOTCH4 MICB LOC102725068 GPSM3 HSPA1L C6orf48 SYNGAP1 DDX39B AIF1 STK19 ABHD16A HLA-DQB1 WDR46 ATP6V1G2-DDX39B C6orf47 LTA HCG23 HSD17B8 SNORD84 LY6G5C APOM HLA-DQA2 RNF5 PSMB8 EHMT2 NELFE GPANK1 AGER HLA-DQB1-AS1 LY6G6C HLA-DRB1 LY6G6E LOC101929163 HLA-DRA B3GALT4 VPS52 HLA-DMA C4B HCG25 DDX39B-AS1 MIR6834 LY6G6D HCG24 ZBTB22 MIR6832 TNF RGL2 HLA-DQB2 BAG6 SLC44A4 LY6G5B MIR5004 MSH5-SAPCD1 LTB HSPA1B ATP6V1G2 MIR6721 MIR4646 C2-AS1 TAPBP HLA-DPB2 PSMB8-AS1 C2 LOC100507547 RING1 BTNL2 C4A TAP2 VARS CLIC1 MIR6833 SAPCD1 LSM2 CUTA HLA-DRB5 KIFC1 HCG26 NCR3 NFKBIL1 NEU1 C6orf25 C6orf10 PSMB9 HLA-DPA1 TNXA CFB CSNK2B SAPCD1-AS1 MSH5 ZBTB9 CYP21A2 ATF6B PPT2-EGFL8 ZBTB12 MIR3135B LOC100287329 PRRT1 HLA-DMB HLA-DPB1 PFDN6 VWA7 HLA-DOB HCP5 RPS18 SNORD52 MIR1236 EGFL8 PPT2 BRD2 LST1 PPP1R2P1 HSPA1A SKIV2L TNXB TAP1 HLA-DQA1
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion CYP21A1P LOC100294145 PBX2 HLA-DOA LY6G6F RXRB DDAH2 SNORA38 FKBPL PHF1 DXO SNORD48 AGPAT1 HLA-DRB6 SNORD117 MCCD1 MIR6873 PRRC2A DAXX COL11A2 SLC39A7 MIR219A1 NOTCH4 MICB LOC102725068 GPSM3 HSPA1L C6orf48 SYNGAP1 DDX39B AIF1 STK19 ABHD16A HLA-DQB1 WDR46 ATP6V1G2-DDX39B C6orf47 LTA HCG23 HSD17B8 SNORD84 LY6G5C APOM HLA-DQA2 RNF5 PSMB8 EHMT2 NELFE GPANK1 AGER HLA-DQB1-AS1 LY6G6C HLA-DRB1 LY6G6E LOC101929163 HLA-DRA B3GALT4 VPS52 HLA-DMA C4B HCG25 DDX39B-AS1 MIR6834 LY6G6D HCG24 ZBTB22 MIR6832 TNF RGL2 HLA-DQB2 BAG6 SLC44A4 LY6G5B MIR5004 MSH5-SAPCD1 LTB HSPA1B ATP6V1G2 MIR6721 MIR4646 C2-AS1 TAPBP HLA-DPB2 PSMB8-AS1 C2 LOC100507547 RING1 BTNL2 C4A TAP2 VARS CLIC1 MIR6833 SAPCD1 LSM2 CUTA HLA-DRB5 KIFC1 HCG26 NCR3 NFKBIL1 NEU1 C6orf25 C6orf10 PSMB9 HLA-DPA1 TNXA CFB CSNK2B SAPCD1-AS1 MSH5 ZBTB9 CYP21A2 ATF6B PPT2-EGFL8 ZBTB12 MIR3135B LOC100287329 PRRT1 HLA-DMB HLA-DPB1 PFDN6 VWA7 HLA-DOB HCP5 RPS18 SNORD52 MIR1236 EGFL8 PPT2 BRD2 LST1 PPP1R2P1 HSPA1A SKIV2L TNXB TAP1 HLA-DQA1
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion LOC100294145 ZBTB9 HLA-DQB1-AS1 TAPBP HLA-DPB2 MIR3135B PSMB8-AS1 HLA-DOA RXRB PHF1 HLA-DMB B3GALT4 HLA-DPB1 PFDN6 VPS52 RING1 HLA-DOB MIR6873 HLA-DMA HCG25 TAP2 RPS18 DAXX COL11A2 SLC39A7 MIR6834 MIR219A1 HCG24 ZBTB22 SYNGAP1 CUTA RGL2 KIFC1 HLA-DQB2 HLA-DQB1 WDR46 HSD17B8 BRD2 MIR5004 PPP1R2P1 PSMB9 HLA-DPA1 HLA-DQA2 TAP1 PSMB8 HLA-DQA1

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