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See other LRRC56 CNV Assays ›
Gene Symbol
LRRC56
Assay Reference Genome
Location

Chr.11:541581 on build GRCh38
Cytoband
11p15.5
Assay ID Hs00959890_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 115399

Gene Name:

 leucine rich repeat containing 56

Gene Aliases:

 -

Location:

 Chr.11:518967-554916 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 9 - Intron 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LRRC56 NM_198075.3 NP_932341.1
XM_005252775.2 XP_005252832.1
XM_005252776.2 XP_005252833.1
XM_006718132.2 XP_006718195.1
XM_006718133.2 XP_006718196.1
XM_011519875.2 XP_011518177.1
XM_011519876.1 XP_011518178.1
XM_011519877.2 XP_011518179.1
XM_017017167.1 XP_016872656.1
XM_017017168.1 XP_016872657.1
AK024495.1 BAB15785.1
BC016439.1
BC035937.1 AAH35937.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv552854 Chr.11:511805 - 619789 on Build GRCh38 Loss LMNTD2 RASSF7 CDHR5 LRRC56 MIR210 PHRF1 MIR210HG IRF7 LOC101059906 HRAS LOC143666
nsv527327 Chr.11:295343 - 620599 on Build GRCh38 Loss IFITM2 LMNTD2 MIR210 PHRF1 IFITM5 RNH1 IFITM1 IRF7 B4GALNT4 LOC101059906 RASSF7 CDHR5 LRRC56 MIR210HG PTDSS2 PKP3 PGGHG HRAS LOC143666 SIGIRR IFITM3 ANO9
nsv951270 Chr.11:528401 - 628100 on Build GRCh38 Deletion LMNTD2 RASSF7 CDHR5 LRRC56 MIR210 PHRF1 MIR210HG IRF7 LOC101059906 SCT HRAS LOC143666
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss TSPAN4 CRACR2B RNH1 IRF7 PIDD1 B4GALNT4 LOC101059906 CHID1 TALDO1 MIR6744 MIR210HG PANO1 POLR2L PKP3 LOC171391 RPLP2 MUC5AC LOC143666 DRD4 ANO9 LMNTD2 EPS8L2 MIR210 PHRF1 MUC6 CD151 SLC25A22 MUC2 RASSF7 CDHR5 LRRC56 AP2A2 DEAF1 PTDSS2 LOC101927503 TOLLIP MUC5B PDDC1 CEND1 SNORA52 SCT TMEM80 HRAS SIGIRR PNPLA2
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss TSPAN4 CRACR2B RNH1 IRF7 PIDD1 LOC101059906 CHID1 TALDO1 MIR6744 MIR210HG PANO1 POLR2L LOC171391 RPLP2 MUC5AC LOC143666 DRD4 ANO9 LMNTD2 EPS8L2 MIR210 PHRF1 MUC6 CD151 SLC25A22 MUC2 RASSF7 CDHR5 LRRC56 AP2A2 DEAF1 PTDSS2 LOC101927503 TOLLIP MUC5B PDDC1 CEND1 SNORA52 SCT TOLLIP-AS1 TMEM80 HRAS SIGIRR PNPLA2
nsv1039558 Chr.11:534242 - 672091 on Build GRCh38 Gain LMNTD2 MIR210 PHRF1 IRF7 RASSF7 CDHR5 LRRC56 MIR210HG DEAF1 SCT HRAS LOC143666 DRD4
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion TSPAN4 CRACR2B RNH1 IRF7 PIDD1 B4GALNT4 LOC101059906 CHID1 TALDO1 MIR210HG PANO1 POLR2L PKP3 LOC171391 RPLP2 LOC143666 DRD4 ANO9 LMNTD2 EPS8L2 MIR210 PHRF1 CD151 SLC25A22 RASSF7 CDHR5 LRRC56 AP2A2 DEAF1 PTDSS2 PDDC1 CEND1 SNORA52 SCT TMEM80 HRAS SIGIRR PNPLA2
nsv1053964 Chr.11:491334 - 692433 on Build GRCh38 Gain LMNTD2 MIR210 PHRF1 RNH1 IRF7 LOC101059906 RASSF7 CDHR5 LRRC56 MIR210HG DEAF1 PTDSS2 SCT HRAS LOC143666 DRD4
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion TSPAN4 CRACR2B RNH1 IRF7 PIDD1 LOC101059906 CHID1 TALDO1 MIR210HG PANO1 POLR2L LOC171391 RPLP2 LOC143666 DRD4 LMNTD2 EPS8L2 MIR210 PHRF1 CD151 SLC25A22 RASSF7 CDHR5 LRRC56 DEAF1 PTDSS2 PDDC1 CEND1 SNORA52 SCT TMEM80 HRAS PNPLA2
nsv552855 Chr.11:532923 - 545087 on Build GRCh38 Loss LRRC56 HRAS

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

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