Hs00968769_cn

• Gene Symbol: LOC339059
• Assay Reference Genome Location: Chr.16:88745186 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 339059
• Gene Name: uncharacterized LOC339059
• Gene Aliases: -
• Location: Chr.16:88742767-88745748 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC339059	NR_120387.1	3	1575
	AK097767.1	3	1575	BAC05165.1
	BC111769.1	2	1622	AAI11770.1

Target Gene Details

• Entrez Gene ID: 9780
• Gene Name: piezo type mechanosensitive ion channel component 1
• Gene Aliases: DHS, FAM38A, LMPH3, Mib
• Location: Chr.16:88715338-88785220 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PIEZO1	NM_001142864.3			NP_001136336.2
	HY165228.1
	KC602455.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	LOC101927793 TRAPPC2L ACSF3 GALNS LOC107987238 CDT1 CTU2 PIEZO1 LOC100289580 PABPN1L LINC00304 APRT LOC100129697 MIR4722 ZNF778 LOC400558 SLC22A31 CBFA2T3 LOC105371409 CDH15 LOC339059
nsv471114	Chr.16:88688461 - 88756339 on Build GRCh38	Gain	LOC100289580 MIR4722 RNF166 CTU2 PIEZO1 LOC339059
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	SNAI3 LOC100289580 SNAI3-AS1 MVD CYBA MIR4722 RNF166 CTU2 PIEZO1 LOC339059
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	SNAI3 LOC100289580 SNAI3-AS1 APRT GALNS LOC107987238 MIR4722 RNF166 CDT1 CTU2 PIEZO1 LOC339059
nsv517643	Chr.16:88713767 - 88756339 on Build GRCh38	Loss	LOC100289580 MIR4722 CTU2 PIEZO1 LOC339059
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	SNAI3 LOC100289580 SNAI3-AS1 MIR4722 RNF166 CTU2 PIEZO1 LOC339059
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	LOC101927793 TRAPPC2L ACSF3 GALNS LOC107987238 LOC100287036 CDT1 PIEZO1 LOC100289580 PABPN1L LINC00304 APRT LOC100129697 ZNF778 LOC400558 SLC22A31 CBFA2T3 LOC105371409 CDH15 LOC105371414 LOC339059 ANKRD11
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	SNAI3 SNAI3-AS1 MIR5189 CYBA ZFPM1 IL17C CTU2 PIEZO1 ZNF469 LOC100289580 MVD MIR4722 RNF166 ZC3H18-AS1 ZC3H18 LOC107984862 LOC339059
nsv1160442	Chr.16:88708161 - 88778524 on Build GRCh38	Deletion	LOC100289580 MIR4722 CTU2 PIEZO1 LOC339059
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	FANCA LOC107987238 LOC100287036 VPS9D1 SPIRE2 PABPN1L LINC00304 MVD CDK10 LOC107984817 CBFA2T3 CENPBD1 CDH15 ACSF3 GALNS AFG3L1P URAHP FAM157C CPNE7 LOC101927817 CDT1 DBNDD1 PIEZO1 PRDM7 TCF25 LOC100289580 LOC100129697 MC1R ZNF778 SNAI3 SPATA33 SPATA2L ZNF276 LOC105371419 TUBB3 IL17C DEF8 GAS8 VPS9D1-AS1 LOC400558 SPG7 SLC22A31 LOC339059 ANKRD11 LOC101927793 TRAPPC2L SNAI3-AS1 DPEP1 TUBB8P7 CYBA CTU2 SNORD68 APRT CHMP1A MIR4722 RNF166 RPL13 GAS8-AS1 LOC105371409 LOC105371414
dgv3065n100	Chr.16:88711587 - 88927172 on Build GRCh38	Gain	LOC101927793 TRAPPC2L GALNS LOC107987238 CDT1 CTU2 PIEZO1 LOC100289580 PABPN1L APRT MIR4722 CBFA2T3 LOC339059

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cation transport
positive regulation of integrin activation
positive regulation of cell-cell adhesion mediated by integrin
cation transmembrane transport

Function(s)

cation channel activity
mechanically-gated ion channel activity