Hs00968769_cn

• Gene Symbol: LOC339059
• Assay Reference Genome Location: Chr.16:88745186 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 339059
• Gene Name: uncharacterized LOC339059
• Gene Aliases: -
• Location: Chr.16:88742767-88745748 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC339059	NR_120387.1	3	1575
	AK097767.1	3	1575	BAC05165.1
	BC111769.1	2	1622	AAI11770.1

Target Gene Details

• Entrez Gene ID: 9780
• Gene Name: piezo type mechanosensitive ion channel component 1
• Gene Aliases: DHS, FAM38A, LMPH3, Mib
• Location: Chr.16:88715338-88785220 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PIEZO1	NM_001142864.3			NP_001136336.2
	HY165228.1
	KC602455.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	GALNS MIR4722 LOC100129697 LOC107987238 PIEZO1 APRT LOC400558 CDT1 CDH15 LOC339059 LINC00304 ZNF778 CBFA2T3 ACSF3 LOC105371409 LOC100289580 LOC101927793 SLC22A31 CTU2 TRAPPC2L PABPN1L
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	RNF166 MIR4722 PIEZO1 LOC100289580 MVD CTU2 SNAI3-AS1 CYBA SNAI3 LOC339059
nsv471114	Chr.16:88688461 - 88756339 on Build GRCh38	Gain	RNF166 MIR4722 PIEZO1 LOC100289580 CTU2 LOC339059
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	GALNS RNF166 MIR4722 LOC107987238 PIEZO1 APRT LOC100289580 CDT1 CTU2 SNAI3-AS1 SNAI3 LOC339059
nsv517643	Chr.16:88713767 - 88756339 on Build GRCh38	Loss	MIR4722 PIEZO1 LOC100289580 CTU2 LOC339059
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	RNF166 MIR4722 PIEZO1 LOC100289580 CTU2 SNAI3-AS1 SNAI3 LOC339059
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	GALNS LOC100287036 LOC100129697 LOC107987238 PIEZO1 APRT LOC400558 ANKRD11 CDT1 CDH15 LOC339059 LINC00304 ZNF778 CBFA2T3 ACSF3 LOC105371409 LOC100289580 LOC101927793 SLC22A31 TRAPPC2L LOC105371414 PABPN1L
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	RNF166 MIR4722 PIEZO1 LOC107984862 MVD ZC3H18-AS1 IL17C CYBA LOC339059 ZFPM1 ZNF469 MIR5189 LOC100289580 ZC3H18 CTU2 SNAI3-AS1 SNAI3
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC100287036 CHMP1A SPIRE2 IL17C DPEP1 VPS9D1 PRDM7 LINC00304 LOC105371414 GALNS RNF166 LOC100129697 PIEZO1 TCF25 APRT LOC400558 CYBA LOC101927817 MC1R ZNF778 VPS9D1-AS1 RPL13 CBFA2T3 FANCA LOC105371409 LOC107984817 SLC22A31 TUBB3 TRAPPC2L PABPN1L URAHP SPATA33 LOC107987238 ZNF276 GAS8-AS1 ANKRD11 CDT1 CDH15 CPNE7 LOC339059 SPG7 ACSF3 TUBB8P7 LOC100289580 LOC101927793 SPATA2L SNORD68 CTU2 DEF8 GAS8 MIR4722 LOC105371419 FAM157C MVD AFG3L1P CENPBD1 DBNDD1 CDK10 SNAI3-AS1 SNAI3
nsv1160442	Chr.16:88708161 - 88778524 on Build GRCh38	Deletion	MIR4722 PIEZO1 LOC100289580 CTU2 LOC339059
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	GALNS MIR4722 LOC100129697 LOC107987238 PIEZO1 APRT CDT1 LOC339059 CBFA2T3 LOC105371409 LOC100289580 LOC101927793 CTU2 TRAPPC2L PABPN1L

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cation transport
positive regulation of integrin activation
positive regulation of cell-cell adhesion mediated by integrin
cation transmembrane transport

Function(s)

cation channel activity
mechanically-gated ion channel activity