Hs00970628_cn

• Gene Symbol: LOC339059
• Assay Reference Genome Location: Chr.16:88744070 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 339059
• Gene Name: uncharacterized LOC339059
• Gene Aliases: -
• Location: Chr.16:88742767-88745748 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC339059	NR_120387.1	2	1203
	AK097767.1	2	1203	BAC05165.1
	BC111769.1	1	1250	AAI11770.1

Target Gene Details

• Entrez Gene ID: 9780
• Gene Name: piezo type mechanosensitive ion channel component 1
• Gene Aliases: DHS, FAM38A, LMPH3, Mib
• Location: Chr.16:88715338-88785220 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PIEZO1	NM_001142864.3			NP_001136336.2
	HY165228.1
	KC602455.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	LOC400558 ZNF778 PIEZO1 CTU2 LOC105371409 MIR4722 TRAPPC2L CBFA2T3 ACSF3 APRT LOC107987238 SLC22A31 CDT1 LOC339059 LOC100289580 LOC100129697 CDH15 PABPN1L GALNS LOC101927793 LINC00304
nsv471114	Chr.16:88688461 - 88756339 on Build GRCh38	Gain	RNF166 LOC339059 PIEZO1 LOC100289580 CTU2 MIR4722
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	RNF166 SNAI3-AS1 LOC339059 PIEZO1 LOC100289580 CTU2 CYBA SNAI3 MIR4722 MVD
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	APRT LOC107987238 RNF166 SNAI3-AS1 CDT1 LOC339059 PIEZO1 LOC100289580 CTU2 SNAI3 GALNS MIR4722
nsv517643	Chr.16:88713767 - 88756339 on Build GRCh38	Loss	LOC339059 PIEZO1 LOC100289580 CTU2 MIR4722
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	RNF166 SNAI3-AS1 LOC339059 PIEZO1 LOC100289580 CTU2 SNAI3 MIR4722
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	LOC400558 LOC105371414 ZNF778 PIEZO1 LOC100287036 ANKRD11 LOC105371409 TRAPPC2L CBFA2T3 ACSF3 APRT LOC107987238 SLC22A31 CDT1 LOC339059 LOC100289580 LOC100129697 CDH15 PABPN1L GALNS LOC101927793 LINC00304
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	ZC3H18-AS1 ZFPM1 PIEZO1 CTU2 CYBA IL17C MIR4722 MVD ZC3H18 MIR5189 RNF166 ZNF469 SNAI3-AS1 LOC339059 LOC100289580 SNAI3 LOC107984862
nsv1160442	Chr.16:88708161 - 88778524 on Build GRCh38	Deletion	LOC339059 PIEZO1 LOC100289580 CTU2 MIR4722
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	FAM157C ZNF778 GAS8-AS1 LOC100287036 SNORD68 SPATA33 SPATA2L LOC100289580 MC1R GALNS DBNDD1 PRDM7 LINC00304 DEF8 FANCA LOC105371409 ACSF3 SLC22A31 CDK10 VPS9D1-AS1 TUBB3 LOC101927817 CPNE7 GAS8 TUBB8P7 LOC105371414 PIEZO1 CTU2 LOC105371419 ANKRD11 CBFA2T3 SPG7 CENPBD1 RNF166 VPS9D1 RPL13 LOC339059 LOC100129697 SNAI3 DPEP1 CDH15 PABPN1L LOC101927793 SPIRE2 LOC400558 LOC107984817 CYBA IL17C MIR4722 URAHP TRAPPC2L TCF25 MVD APRT LOC107987238 ZNF276 SNAI3-AS1 CDT1 CHMP1A AFG3L1P
dgv3065n100	Chr.16:88711587 - 88927172 on Build GRCh38	Gain	PIEZO1 CTU2 MIR4722 TRAPPC2L CBFA2T3 APRT LOC107987238 CDT1 LOC339059 LOC100289580 PABPN1L GALNS LOC101927793

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cation transport
positive regulation of integrin activation
positive regulation of cell-cell adhesion mediated by integrin
cation transmembrane transport

Function(s)

cation channel activity
mechanically-gated ion channel activity