Hs00970628_cn

• Gene Symbol: LOC339059
• Assay Reference Genome Location: Chr.16:88744070 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 339059
• Gene Name: uncharacterized LOC339059
• Gene Aliases: -
• Location: Chr.16:88742767-88745748 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC339059	NR_120387.1	2	1203
	AK097767.1	2	1203	BAC05165.1
	BC111769.1	1	1250	AAI11770.1

Target Gene Details

• Entrez Gene ID: 9780
• Gene Name: piezo type mechanosensitive ion channel component 1
• Gene Aliases: DHS, FAM38A, LMPH3, Mib
• Location: Chr.16:88715338-88785220 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PIEZO1	NM_001142864.3			NP_001136336.2
	HY165228.1
	KC602455.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	LOC101927793 LOC100129697 APRT LOC107987238 ZNF778 CTU2 CDH15 CBFA2T3 LOC105371409 TRAPPC2L GALNS LOC400558 LOC339059 LINC00304 ACSF3 LOC100289580 MIR4722 PABPN1L CDT1 SLC22A31 PIEZO1
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	LOC339059 RNF166 MVD LOC100289580 SNAI3-AS1 MIR4722 CYBA SNAI3 CTU2 PIEZO1
nsv471114	Chr.16:88688461 - 88756339 on Build GRCh38	Gain	LOC339059 RNF166 LOC100289580 MIR4722 CTU2 PIEZO1
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	LOC339059 RNF166 LOC100289580 APRT SNAI3-AS1 LOC107987238 MIR4722 SNAI3 CTU2 CDT1 GALNS PIEZO1
nsv517643	Chr.16:88713767 - 88756339 on Build GRCh38	Loss	LOC339059 LOC100289580 MIR4722 CTU2 PIEZO1
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	LOC339059 RNF166 LOC100289580 SNAI3-AS1 MIR4722 SNAI3 CTU2 PIEZO1
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	LOC101927793 LOC100129697 APRT LOC107987238 ZNF778 LOC105371414 CDH15 CBFA2T3 LOC105371409 TRAPPC2L GALNS LOC400558 LOC339059 LOC100287036 LINC00304 ACSF3 LOC100289580 PABPN1L ANKRD11 CDT1 SLC22A31 PIEZO1
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	SNAI3-AS1 ZNF469 CYBA CTU2 MIR5189 ZC3H18-AS1 LOC107984862 IL17C LOC339059 RNF166 MVD LOC100289580 ZC3H18 MIR4722 SNAI3 PIEZO1 ZFPM1
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	ZNF778 GAS8 ZNF276 LOC105371414 LOC339059 LINC00304 ACSF3 VPS9D1-AS1 VPS9D1 SNAI3 DPEP1 ANKRD11 CDT1 PIEZO1 CHMP1A SPG7 LOC100129697 LOC107984817 URAHP AFG3L1P FAM157C TUBB3 DBNDD1 GAS8-AS1 RNF166 MIR4722 SLC22A31 PRDM7 LOC107987238 LOC105371419 CDH15 SPIRE2 CBFA2T3 LOC400558 IL17C LOC100287036 MVD SNORD68 RPL13 CENPBD1 FANCA PABPN1L LOC101927793 APRT SNAI3-AS1 CDK10 CYBA CTU2 LOC105371409 TRAPPC2L GALNS TUBB8P7 LOC100289580 CPNE7 DEF8 MC1R TCF25 SPATA2L SPATA33 LOC101927817
nsv1160442	Chr.16:88708161 - 88778524 on Build GRCh38	Deletion	LOC339059 LOC100289580 MIR4722 CTU2 PIEZO1
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	LOC101927793 LOC100129697 APRT LOC107987238 CTU2 CBFA2T3 LOC105371409 TRAPPC2L GALNS LOC339059 LOC100289580 MIR4722 PABPN1L CDT1 PIEZO1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cation transport
positive regulation of integrin activation
positive regulation of cell-cell adhesion mediated by integrin
cation transmembrane transport

Function(s)

cation channel activity
mechanically-gated ion channel activity