Hs00976327_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137032763 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2	2	1214	NP_997394.1
	XM_017014717.1	2	179	XP_016870206.1
	AK124899.1	2	1214	BAC85986.1
	BC132809.1
	BC136839.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3	1	78	NP_004470.1
	BC086312.1	1	78	AAH86312.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	CLIC3 MAN1B1 C9orf142 LCNL1 FUT7 ENTPD2 PTGDS UAP1L1 MAN1B1-AS1 GRIN1 NPDC1 LRRC26 TMEM210 PRR31 LOC101930307 MIR3621 ABCA2 SAPCD2 DPP7 C9orf139
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	C8G C9orf173-AS1 MIR4479 MAMDC4 TMEM203 TPRN PHPT1 LOC101930307 TUBB4B RNF208 CLIC3 EXD3 FBXW5 SSNA1 FAM166A SLC34A3 MIR4292 NDOR1 ENTPD8 NOXA1 CCDC183-AS1 STPG3 TRAF2 NPDC1 PNPLA7 TMEM210 MIR3621 DPP7 ANAPC2 RABL6 RNF224 FUT7 NSMF C9orf172 ENTPD2 CYSRT1 PTGDS NRARP MAN1B1-AS1 ABCA2 LCN12 CCDC183 SAPCD2 EDF1 MIR7114 MAN1B1 C9orf142 LCNL1 UAP1L1 NELFB GRIN1 LRRC26 PRR31 TOR4A C9orf139
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	C8G CLIC3 MAN1B1 C9orf142 LCNL1 FUT7 ENTPD2 PTGDS UAP1L1 MAN1B1-AS1 NPDC1 PRR31 LOC101930307 ABCA2 LCN12 SAPCD2 DPP7 C9orf139
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	C8G MIR4479 SNAPC4 MAMDC4 INPP5E SDCCAG3 PHPT1 LOC101930307 FAM69B SNORA17A LOC100128593 SNHG7 MIR4673 CLIC3 EGFL7 FBXW5 NALT1 HSPC324 LCN15 SNORA17B MIR4292 MIR4674 CCDC183-AS1 TRAF2 NPDC1 TMEM210 MIR3621 TMEM141 DPP7 MIR6722 RABL6 MIR126 FUT7 C9orf172 ENTPD2 PTGDS LINC01451 MAN1B1-AS1 NOTCH1 LCN6 CARD9 AGPAT2 ABCA2 LCN12 CCDC183 SAPCD2 EDF1 SEC16A LCN10 MAN1B1 C9orf142 LCNL1 LCN8 UAP1L1 PMPCA GRIN1 LRRC26 PRR31 C9orf163 DNLZ C9orf139
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	MAN1B1 FUT7 SSNA1 ENTPD2 UAP1L1 MAN1B1-AS1 GRIN1 NPDC1 LRRC26 TMEM210 LOC101930307 MIR3621 SAPCD2 DPP7 ANAPC2 C9orf139
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	C8G C9orf173-AS1 MIR4479 MAMDC4 TMEM203 TPRN PHPT1 LOC101930307 TUBB4B FAM69B SNORA17A LOC100128593 SNHG7 RNF208 CLIC3 EGFL7 EXD3 FBXW5 SSNA1 HSPC324 FAM166A SLC34A3 LCN15 SNORA17B MIR4292 NDOR1 CCDC183-AS1 STPG3 TRAF2 NPDC1 TMEM210 MIR3621 TMEM141 DPP7 MIR6722 ANAPC2 RABL6 MIR126 RNF224 FUT7 C9orf172 ENTPD2 CYSRT1 PTGDS LINC01451 NRARP MAN1B1-AS1 LCN6 AGPAT2 ABCA2 LCN12 CCDC183 SAPCD2 EDF1 LCN10 MAN1B1 C9orf142 LCNL1 LCN8 UAP1L1 NELFB GRIN1 LRRC26 PRR31 TOR4A C9orf139
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	NPDC1 FUT7 ABCA2 ENTPD2 C9orf139

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity