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See other TNFRSF4 CNV Assays ›
Gene Symbol
TNFRSF4
Assay Reference Genome
Location

Chr.1:1212005 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00988272_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 7293

Gene Name:

 TNF receptor superfamily member 4

Gene Aliases:

 ACT35, CD134, IMD16, OX40, TXGP1L

Location:

 Chr.1:1211326-1216812 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 6 - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNFRSF4 NM_003327.3 NP_003318.1
XM_011542074.2 XP_011540376.1
XM_011542075.2 XP_011540377.1
XM_011542076.2 XP_011540378.1
XM_011542077.2 XP_011540379.1
XM_017002231.1 XP_016857720.1
XM_017002232.1 XP_016857721.1
AW293499.1
BC105070.1 AAI05071.1
BC105072.1 AAI05073.1
S76792.1 AAB33944.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss PLEKHN1 SDF4 CFAP74 LOC100129534 PUSL1 SAMD11 FAAP20 LOC105378947 LINC00115 ATAD3C MORN1 TAS1R3 LOC102724312 MTND1P23 MIR200B FAM138A ATAD3A LOC100287934 MIR6723 CPSF3L OR4F29 MMP23A TNFRSF4 LOC107984841 LOC105378589 MIR6808 HES4 LOC100133331 LOC100132287 ATAD3B LOC107985729 TMEM240 AGRN LOC100288175 OR4F5 OR4F16 SLC35E2 TTLL10-AS1 WASH7P MTND2P28 FAM41C MIR6726 LOC105378949 DVL1 LINC01342 CALML6 MIR6859-2 LOC100288069 LOC101928626 ANKRD65 VWA1 RNF223 SKI TTLL10 MIR6727 UBE2J2 LOC105378592 FAM132A GABRD SSU72 NADK FAM87B LINC01128 LOC100134822 CDK11B LOC729737 PRKCZ LOC284600 CPTP AURKAIP1 MXRA8 SLC35E2B CDK11A LOC107985728 C1orf159 DDX11L1 PERM1 MIB2 GNB1 LOC100506504 CCNL2 TNFRSF18 MIR429 ISG15 MRPL20 MIR200A TMEM52 TMEM88B KLHL17 SCNN1D MMP23B B3GALT6 LOC102725121 FNDC10 LOC100130417 MIR6859-1 MIR1302-2 NOC2L LOC148413 ACAP3 LOC105378948 LOC105378591
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain SDF4 FAM132A MIR200A C1orf159 MIR200B SCNN1D RNF223 TTLL10 B3GALT6 TTLL10-AS1 UBE2J2 LOC105378948 TNFRSF4 TNFRSF18 MIR429 LINC01342
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss SDF4 FAM132A MIR200A C1orf159 MIR200B SCNN1D RNF223 TTLL10 ACAP3 B3GALT6 TTLL10-AS1 UBE2J2 TNFRSF4 MIR6726 TNFRSF18 MIR429 LINC01342
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss SDF4 TTLL10 B3GALT6 TTLL10-AS1 TNFRSF4 TNFRSF18
nsv544963 Chr.1:1206945 - 1214281 on Build GRCh38 Loss TNFRSF4 TNFRSF18
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain ISG15 HES4 PLEKHN1 SDF4 MIR200A KLHL17 AGRN SAMD11 LOC100288175 LOC284600 TTLL10-AS1 FAM41C LOC100130417 LOC107985728 LINC01342 C1orf159 MIR200B RNF223 NOC2L TTLL10 PERM1 LOC105378948 TNFRSF4 TNFRSF18 MIR429
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication SDF4 FAM132A MIR200A SCNN1D AGRN PUSL1 LOC100288175 TAS1R3 B3GALT6 CPTP TTLL10-AS1 MIR6726 LINC01342 C1orf159 MIR200B RNF223 TTLL10 ACAP3 MIR6727 CPSF3L UBE2J2 LOC105378948 TNFRSF4 TNFRSF18 MIR429
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss PLEKHN1 SDF4 FAM132A SSU72 NADK FAM87B PUSL1 SAMD11 LINC01128 LINC00115 ATAD3C CDK11B TAS1R3 LOC284600 CPTP AURKAIP1 MXRA8 SLC35E2B CDK11A LOC107985728 LOC102724312 C1orf159 MIR200B ATAD3A LOC100287934 PERM1 MIB2 CPSF3L CCNL2 MMP23A TNFRSF4 TNFRSF18 MIR6808 MIR429 ISG15 MRPL20 HES4 MIR200A ATAD3B TMEM88B KLHL17 LOC107985729 TMEM240 SCNN1D AGRN LOC100288175 SLC35E2 MMP23B B3GALT6 FNDC10 TTLL10-AS1 FAM41C LOC100130417 MIR6726 DVL1 LINC01342 LOC100288069 ANKRD65 VWA1 RNF223 NOC2L LOC148413 TTLL10 ACAP3 MIR6727 UBE2J2 LOC105378948
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss ISG15 HES4 PLEKHN1 SDF4 FAM132A MIR200A KLHL17 FAM87B AGRN SAMD11 LINC01128 LOC100288175 LINC00115 B3GALT6 LOC284600 TTLL10-AS1 FAM41C LOC100130417 LOC107985728 LINC01342 C1orf159 MIR200B RNF223 NOC2L TTLL10 PERM1 UBE2J2 LOC105378948 TNFRSF4 TNFRSF18 MIR429
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MRPL20 SDF4 FAM132A MIR200A ATAD3B TMEM88B SSU72 LOC107985729 TMEM240 SCNN1D PUSL1 ATAD3C CDK11B MMP23B TAS1R3 B3GALT6 CPTP FNDC10 TTLL10-AS1 AURKAIP1 MXRA8 MIR6726 DVL1 LINC01342 LOC102724312 C1orf159 ANKRD65 VWA1 MIR200B ATAD3A LOC148413 TTLL10 ACAP3 MIR6727 MIB2 CPSF3L UBE2J2 CCNL2 TNFRSF4 TNFRSF18 MIR6808 MIR429
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain ISG15 MRPL20 HES4 PLEKHN1 SDF4 FAM132A MIR200A TMEM88B KLHL17 SCNN1D AGRN PUSL1 SAMD11 LOC100288175 TAS1R3 B3GALT6 LOC284600 CPTP TTLL10-AS1 AURKAIP1 MXRA8 LOC100130417 MIR6726 LOC107985728 DVL1 LINC01342 C1orf159 ANKRD65 MIR200B RNF223 NOC2L LOC148413 TTLL10 PERM1 ACAP3 MIR6727 CPSF3L UBE2J2 LOC105378948 CCNL2 TNFRSF4 TNFRSF18 MIR6808 MIR429
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion ISG15 HES4 PLEKHN1 SDF4 MIR200A C1orf159 KLHL17 MIR200B RNF223 AGRN SAMD11 NOC2L LOC100288175 TTLL10 PERM1 TTLL10-AS1 LOC105378948 TNFRSF4 TNFRSF18 MIR429 LINC01342
dgv24n54 Chr.1:1205055 - 1213515 on Build GRCh38 Loss TNFRSF4 TNFRSF18
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain SDF4 FAM132A MIR200A MIR200B SCNN1D PUSL1 TTLL10 ACAP3 MIR6727 B3GALT6 CPSF3L TTLL10-AS1 UBE2J2 TNFRSF4 MIR6726 TNFRSF18 MIR429

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