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See other SDF4 CNV Assays ›
Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1228572 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00990744_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 2 551 NP_057260.2
NM_016547.2 2 551 NP_057631.1
XM_011541556.1 2 489 XP_011539858.1
AF132749.1 2 468 AAL75950.1
AF153686.1 2 515 AAD51612.1
AF178986.1 2 515 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 2 485 BAC11563.1
AK222521.1 2 469 BAD96241.1
AK223079.1 2 467 BAD96799.1
AK299810.1 2 425
AK315517.1 2 470
BC006211.2 2 432 AAH06211.1
BC007625.1 1 300 AAH07625.1
BC008917.2 2 451 AAH08917.1
BC011244.1 2 405 AAH11244.1
BC022375.1 2 485 AAH22375.1
DC405714.1
L79912.1 1 230 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication CPSF3L ACAP3 B3GALT6 LINC01342 MIR200B TTLL10-AS1 SDF4 SCNN1D TTLL10 CPTP TNFRSF4 MIR200A RNF223 LOC105378948 MIR6727 AGRN PUSL1 LOC100288175 MIR6726 MIR429 TNFRSF18 UBE2J2 C1orf159 FAM132A TAS1R3
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss NOC2L TMEM88B MIB2 ACAP3 LINC01342 MIR200B TTLL10-AS1 SSU72 SDF4 SAMD11 LINC01128 TTLL10 LOC284600 CCNL2 MIR6808 SLC35E2B TNFRSF4 SLC35E2 MIR200A PERM1 RNF223 LOC105378948 DVL1 MIR6727 NADK AGRN ATAD3A PUSL1 ATAD3C LOC100288069 ATAD3B LOC100130417 CDK11A HES4 UBE2J2 LOC100287934 FAM132A LOC107985729 TAS1R3 CPSF3L B3GALT6 CDK11B FAM41C AURKAIP1 SCNN1D CPTP LOC148413 FNDC10 ANKRD65 LOC102724312 MMP23A ISG15 LINC00115 LOC100288175 PLEKHN1 KLHL17 FAM87B MXRA8 TMEM240 MRPL20 MIR6726 VWA1 MIR429 LOC107985728 TNFRSF18 C1orf159 MMP23B
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss NOC2L TMEM88B MIB2 ACAP3 LINC01342 TTLL10-AS1 SSU72 SAMD11 LINC01128 GNB1 TTLL10 WASH7P CCNL2 OR4F16 SLC35E2B TNFRSF4 SLC35E2 MIR200A PERM1 MIR6859-1 RNF223 LOC105378948 LOC105378592 AGRN PUSL1 LOC101928626 ATAD3C LOC100134822 LOC105378949 LOC105378947 HES4 UBE2J2 LOC100287934 FAM132A LOC105378591 TMEM52 PRKCZ B3GALT6 FAAP20 CPTP OR4F5 FNDC10 MMP23A LINC00115 LOC100288175 KLHL17 MXRA8 MTND2P28 MRPL20 VWA1 LOC100129534 TNFRSF18 MTND1P23 C1orf159 LOC100506504 CALML6 MORN1 GABRD MIR200B CFAP74 LOC107984841 SDF4 LOC100133331 MIR6723 LOC284600 MIR6808 DVL1 MIR6727 NADK ATAD3A LOC100288069 LOC105378589 DDX11L1 ATAD3B LOC100130417 CDK11A OR4F29 LOC107985729 TAS1R3 MIR6859-2 CPSF3L FAM138A CDK11B FAM41C SKI AURKAIP1 SCNN1D LOC148413 MIR1302-2 LOC729737 ANKRD65 LOC102724312 ISG15 LOC102725121 PLEKHN1 FAM87B TMEM240 MIR6726 MIR429 LOC107985728 LOC100132287 MMP23B
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss MIR6726 ACAP3 B3GALT6 UBE2J2 SDF4 FAM132A SCNN1D
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss NOC2L B3GALT6 LINC01342 MIR200B TTLL10-AS1 FAM41C SDF4 SAMD11 LINC01128 TTLL10 LOC284600 TNFRSF4 MIR200A PERM1 RNF223 LOC105378948 AGRN ISG15 LINC00115 LOC100288175 PLEKHN1 KLHL17 FAM87B LOC100130417 MIR429 LOC107985728 HES4 TNFRSF18 UBE2J2 C1orf159 FAM132A
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion CPSF3L TMEM88B MIB2 ACAP3 B3GALT6 CDK11B LINC01342 MIR200B TTLL10-AS1 SSU72 SDF4 AURKAIP1 SCNN1D TTLL10 CPTP LOC148413 CCNL2 MIR6808 TNFRSF4 MIR200A FNDC10 ANKRD65 LOC102724312 DVL1 MIR6727 ATAD3A PUSL1 ATAD3C MXRA8 TMEM240 ATAD3B MRPL20 MIR6726 VWA1 MIR429 TNFRSF18 UBE2J2 C1orf159 MMP23B FAM132A LOC107985729 TAS1R3
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain CPSF3L NOC2L TMEM88B ACAP3 B3GALT6 LINC01342 MIR200B TTLL10-AS1 SDF4 AURKAIP1 SAMD11 SCNN1D TTLL10 LOC284600 CPTP LOC148413 CCNL2 MIR6808 TNFRSF4 MIR200A PERM1 ANKRD65 RNF223 LOC105378948 DVL1 MIR6727 AGRN ISG15 PUSL1 LOC100288175 PLEKHN1 KLHL17 MXRA8 MRPL20 LOC100130417 MIR6726 MIR429 LOC107985728 HES4 TNFRSF18 UBE2J2 C1orf159 FAM132A TAS1R3
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain B3GALT6 LINC01342 MIR200B TTLL10-AS1 SDF4 SCNN1D TTLL10 MIR429 TNFRSF4 MIR200A TNFRSF18 UBE2J2 C1orf159 FAM132A RNF223 LOC105378948
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss ACAP3 B3GALT6 LINC01342 MIR200B TTLL10-AS1 SDF4 SCNN1D TTLL10 MIR6726 MIR429 TNFRSF4 MIR200A TNFRSF18 UBE2J2 C1orf159 FAM132A RNF223
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain CPSF3L PUSL1 ACAP3 B3GALT6 MIR200B TTLL10-AS1 SDF4 SCNN1D TTLL10 MIR6726 MIR429 TNFRSF4 MIR200A TNFRSF18 UBE2J2 FAM132A MIR6727
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10 TNFRSF4 B3GALT6 TNFRSF18 TTLL10-AS1 SDF4

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