Hs01033609_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:847280 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Overlaps Exon 6 - Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	SNORA52 CHID1 SLC25A22 RPLP2 PANO1 CRACR2B CD151 TSPAN4 LOC171391 PNPLA2 PDDC1 PIDD1 CEND1 POLR2L
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	DEAF1 RASSF7 CHID1 DRD4 SLC25A22 RPLP2 PANO1 TALDO1 CRACR2B TOLLIP CD151 TSPAN4 MIR210HG LOC143666 PNPLA2 PIDD1 LRRC56 MIR6744 CEND1 SCT PHRF1 B4GALNT4 LMNTD2 MUC5AC MUC5B PTDSS2 MIR210 RNH1 SIGIRR CDHR5 SNORA52 EPS8L2 ANO9 LOC101927503 PKP3 HRAS LOC101059906 LOC171391 PDDC1 TMEM80 POLR2L MUC2 IRF7 AP2A2 MUC6
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	SNORA52 CHID1 SLC25A22 RPLP2 PANO1 CRACR2B CD151 TSPAN4 LOC171391 PNPLA2 PDDC1 PIDD1 CEND1 POLR2L AP2A2
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 CHID1 POLR2L
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	DEAF1 RASSF7 CHID1 DRD4 SLC25A22 RPLP2 PANO1 TALDO1 CRACR2B TOLLIP CD151 TSPAN4 MIR210HG LOC143666 PNPLA2 PIDD1 LRRC56 MIR6744 CEND1 SCT TOLLIP-AS1 PHRF1 LMNTD2 MUC5AC MUC5B PTDSS2 MIR210 RNH1 SIGIRR CDHR5 SNORA52 EPS8L2 ANO9 LOC101927503 HRAS LOC101059906 LOC171391 PDDC1 TMEM80 POLR2L MUC2 IRF7 AP2A2 MUC6
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	TSPAN4 POLR2L
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	TSPAN4 SNORA52 CHID1 PNPLA2 PIDD1 RPLP2 POLR2L CRACR2B AP2A2 CD151
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	SNORA52 CHID1 SLC25A22 RPLP2 PANO1 CRACR2B CD151 TSPAN4 LOC171391 PNPLA2 PDDC1 PIDD1 CEND1 POLR2L
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	DEAF1 RASSF7 CHID1 DRD4 SLC25A22 RPLP2 PANO1 TALDO1 CRACR2B CD151 TSPAN4 MIR210HG LOC143666 PNPLA2 PIDD1 LRRC56 CEND1 SCT PHRF1 B4GALNT4 LMNTD2 PTDSS2 MIR210 RNH1 SIGIRR CDHR5 SNORA52 EPS8L2 ANO9 PKP3 HRAS LOC101059906 LOC171391 PDDC1 TMEM80 POLR2L IRF7 AP2A2
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	TSPAN4 CHID1 PNPLA2 POLR2L CRACR2B CD151
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	DEAF1 RASSF7 CHID1 DRD4 SLC25A22 RPLP2 PANO1 TALDO1 CRACR2B CD151 TSPAN4 MIR210HG LOC143666 PNPLA2 PIDD1 LRRC56 CEND1 SCT PHRF1 LMNTD2 PTDSS2 MIR210 RNH1 CDHR5 SNORA52 EPS8L2 HRAS LOC101059906 LOC171391 PDDC1 TMEM80 POLR2L IRF7
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	SNORA52 CHID1 SLC25A22 RPLP2 PANO1 TALDO1 CRACR2B CD151 TSPAN4 LOC171391 PNPLA2 PDDC1 PIDD1 CEND1 POLR2L

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding