Hs01033609_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:847280 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Overlaps Exon 6 - Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	PNPLA2 CHID1 SLC25A22 RPLP2 PIDD1 CD151 PANO1 PDDC1 CEND1 CRACR2B POLR2L TSPAN4 SNORA52 LOC171391
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	PNPLA2 B4GALNT4 SLC25A22 LOC101927503 PIDD1 LOC101059906 PDDC1 CDHR5 LRRC56 RASSF7 IRF7 SIGIRR PTDSS2 EPS8L2 RNH1 TALDO1 MIR6744 MUC5B ANO9 LMNTD2 PKP3 TSPAN4 LOC171391 CHID1 LOC143666 MUC5AC MUC6 SCT TMEM80 MIR210HG RPLP2 CD151 PANO1 TOLLIP MIR210 PHRF1 AP2A2 DRD4 HRAS DEAF1 CEND1 CRACR2B MUC2 POLR2L SNORA52
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	PNPLA2 CHID1 SLC25A22 RPLP2 PIDD1 CD151 PANO1 PDDC1 AP2A2 CEND1 CRACR2B POLR2L TSPAN4 SNORA52 LOC171391
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	PNPLA2 SLC25A22 LOC101927503 PIDD1 LOC101059906 PDDC1 CDHR5 LRRC56 RASSF7 IRF7 SIGIRR PTDSS2 EPS8L2 RNH1 TALDO1 MIR6744 MUC5B ANO9 LMNTD2 TSPAN4 LOC171391 CHID1 LOC143666 MUC5AC MUC6 SCT TMEM80 MIR210HG RPLP2 CD151 PANO1 TOLLIP TOLLIP-AS1 MIR210 PHRF1 AP2A2 DRD4 HRAS DEAF1 CEND1 CRACR2B MUC2 POLR2L SNORA52
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 POLR2L TSPAN4
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	PNPLA2 CHID1 AP2A2 RPLP2 PIDD1 CD151 CRACR2B POLR2L TSPAN4 SNORA52
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	POLR2L TSPAN4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	PNPLA2 B4GALNT4 SLC25A22 PIDD1 LOC101059906 PDDC1 CDHR5 LRRC56 RASSF7 IRF7 SIGIRR PTDSS2 EPS8L2 RNH1 TALDO1 ANO9 LMNTD2 PKP3 TSPAN4 LOC171391 CHID1 LOC143666 SCT TMEM80 MIR210HG RPLP2 CD151 PANO1 MIR210 PHRF1 AP2A2 DRD4 HRAS DEAF1 CEND1 CRACR2B POLR2L SNORA52
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	PNPLA2 CHID1 SLC25A22 RPLP2 PIDD1 CD151 PANO1 PDDC1 CEND1 CRACR2B POLR2L TSPAN4 SNORA52 LOC171391
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	PNPLA2 SLC25A22 PIDD1 LOC101059906 PDDC1 CDHR5 LRRC56 RASSF7 IRF7 PTDSS2 EPS8L2 RNH1 TALDO1 LMNTD2 TSPAN4 LOC171391 CHID1 LOC143666 SCT TMEM80 MIR210HG RPLP2 CD151 PANO1 MIR210 PHRF1 DRD4 HRAS DEAF1 CEND1 CRACR2B POLR2L SNORA52
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	PNPLA2 CHID1 CD151 CRACR2B POLR2L TSPAN4
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	PNPLA2 CHID1 SLC25A22 RPLP2 PIDD1 CD151 PANO1 PDDC1 TALDO1 CEND1 CRACR2B POLR2L TSPAN4 SNORA52 LOC171391

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding