Genomic Map
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Target Gene Details
Entrez Gene ID: | 199990 |
Gene Name: | Fanconi anemia core complex associated protein 20 |
Gene Aliases: |
C1orf86, FP7162 |
Location: |
Chr.1:2184460-2212720 on Build GRCh38 |
Assay Gene Location: | Within Exon 16 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| FAAP20 | NM_001146310.1 | 8 | 1596 | NP_001139782.1 |
| NM_001256945.1 | 3 | 726 | NP_001243874.1 | |
| NM_001282671.1 | 8 | 1677 | NP_001269600.1 | |
| NM_001282672.1 | 7 | 1546 | NP_001269601.1 | |
| NM_001282673.1 | 4 | 862 | NP_001269602.1 | |
| XM_017000554.1 | 4 | 837 | XP_016856043.1 | |
| AF469129.1 | 8 | 1643 | AAP97719.1 | |
| AK055593.1 | 7 | 1546 | BAB70965.1 | |
| AK127994.1 | 8 | 1596 | BAC87220.1 | |
| BU192678.1 | 3 | 687 |
Target Gene Details
Entrez Gene ID: | 5590 |
Gene Name: | protein kinase C zeta |
Gene Aliases: |
PKC-ZETA, PKC2 |
Location: |
Chr.1:2050470-2185395 on Build GRCh38 |
Assay Gene Location: | Within Exon 28 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| PRKCZ | NM_001033581.1 | 15 | 1867 | NP_001028753.1 |
| NM_001033582.1 | 15 | 1764 | NP_001028754.1 | |
| NM_001242874.1 | 15 | 1874 | NP_001229803.1 | |
| NM_002744.4 | 18 | 2079 | NP_002735.3 | |
| XM_017001790.1 | 18 | 2099 | XP_016857279.1 | |
| XM_017001791.1 | 15 | 1724 | XP_016857280.1 | |
| XM_017001796.1 | 15 | 1904 | XP_016857285.1 | |
| XM_017001798.1 | 15 | 1817 | XP_016857287.1 | |
| XM_017001799.1 | 15 | 2201 | XP_016857288.1 | |
| XM_017001801.1 | 13 | 1521 | XP_016857290.1 | |
| XM_017001804.1 | 15 | 1987 | XP_016857293.1 | |
| XM_017001805.1 | 15 | 1957 | XP_016857294.1 | |
| AK097627.1 | 13 | 1500 | ||
| AK131526.1 | 8 | 1614 | ||
| AK290995.1 | ||||
| AK294782.1 | ||||
| BC008058.2 | 18 | 2026 | AAH08058.1 | |
| BC014270.2 | 18 | 2079 | AAH14270.1 | |
| Z15108.1 | 18 | 1900 | CAA78813.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv461727 | Chr.1:2151050 - 2251031 on Build GRCh38 | Loss |
 PRKCZ
FAAP20
SKI
LOC105378592
LOC100506504
|
| nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss |
ATAD3C
FAAP20
TMEM240
LOC102725121
OR4F5
LOC100132287
CDK11B
DDX11L1
UBE2J2
RNF223
NADK
LOC105378948
CDK11A
MIB2
AGRN
LOC100287934
CALML6
MIR6726
TMEM52
LOC107985728
LOC284600
SKI
TMEM88B
LINC01128
TTLL10
LINC01342
SSU72
CFAP74
LOC148413
SCNN1D
ATAD3A
LINC00115
CPTP
LOC729737
WASH7P
GNB1
FAM87B
MIR6723
CPSF3L
MTND2P28
LOC100288175
PRKCZ
OR4F29
MIR6859-2
LOC101928626
PERM1
VWA1
MIR429
FAM41C
MIR200B
LOC100288069
LOC105378591
LOC105378949
LOC100134822
MIR200A
SDF4
FAM138A
MXRA8
MMP23A
TNFRSF4
TNFRSF18
ATAD3B
AURKAIP1
LOC105378947
LOC105378592
MTND1P23
SLC35E2
HES4
KLHL17
PUSL1
CCNL2
LOC107984841
ANKRD65
DVL1
LOC102724312
TAS1R3
ISG15
LOC107985729
GABRD
FAM132A
MRPL20
MIR6808
LOC100129534
SLC35E2B
C1orf159
PLEKHN1
MMP23B
LOC100130417
TTLL10-AS1
LOC100506504
LOC100133331
OR4F16
LOC105378589
MIR6859-1
NOC2L
FNDC10
SAMD11
B3GALT6
ACAP3
MORN1
MIR1302-2
MIR6727
|
| nsv951530 | Chr.1:2153662 - 2229961 on Build GRCh38 | Deletion |
PRKCZ
FAAP20
SKI
LOC105378592
LOC100506504
|
| nsv834557 | Chr.1:2117631 - 2311104 on Build GRCh38 | Loss |
PRKCZ
FAAP20
SKI
LOC105378592
LOC100506504
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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