Genomic Map
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Target Gene Details
Entrez Gene ID: | 199990 |
Gene Name: | Fanconi anemia core complex associated protein 20 |
Gene Aliases: |
C1orf86, FP7162 |
Location: |
Chr.1:2184460-2212720 on Build GRCh38 |
Assay Gene Location: | Within Exon 16 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| FAAP20 | NM_001146310.1 | 8 | 1596 | NP_001139782.1 |
| NM_001256945.1 | 3 | 726 | NP_001243874.1 | |
| NM_001282671.1 | 8 | 1677 | NP_001269600.1 | |
| NM_001282672.1 | 7 | 1546 | NP_001269601.1 | |
| NM_001282673.1 | 4 | 862 | NP_001269602.1 | |
| XM_017000554.1 | 4 | 837 | XP_016856043.1 | |
| AF469129.1 | 8 | 1643 | AAP97719.1 | |
| AK055593.1 | 7 | 1546 | BAB70965.1 | |
| AK127994.1 | 8 | 1596 | BAC87220.1 | |
| BU192678.1 | 3 | 687 |
Target Gene Details
Entrez Gene ID: | 5590 |
Gene Name: | protein kinase C zeta |
Gene Aliases: |
PKC-ZETA, PKC2 |
Location: |
Chr.1:2050470-2185395 on Build GRCh38 |
Assay Gene Location: | Within Exon 28 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| PRKCZ | NM_001033581.1 | 15 | 1867 | NP_001028753.1 |
| NM_001033582.1 | 15 | 1764 | NP_001028754.1 | |
| NM_001242874.1 | 15 | 1874 | NP_001229803.1 | |
| NM_002744.4 | 18 | 2079 | NP_002735.3 | |
| XM_017001790.1 | 18 | 2099 | XP_016857279.1 | |
| XM_017001791.1 | 15 | 1724 | XP_016857280.1 | |
| XM_017001796.1 | 15 | 1904 | XP_016857285.1 | |
| XM_017001798.1 | 15 | 1817 | XP_016857287.1 | |
| XM_017001799.1 | 15 | 2201 | XP_016857288.1 | |
| XM_017001801.1 | 13 | 1521 | XP_016857290.1 | |
| XM_017001804.1 | 15 | 1987 | XP_016857293.1 | |
| XM_017001805.1 | 15 | 1957 | XP_016857294.1 | |
| AK097627.1 | 13 | 1500 | ||
| AK131526.1 | 8 | 1614 | ||
| AK290995.1 | ||||
| AK294782.1 | ||||
| BC008058.2 | 18 | 2026 | AAH08058.1 | |
| BC014270.2 | 18 | 2079 | AAH14270.1 | |
| Z15108.1 | 18 | 1900 | CAA78813.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss |
 SAMD11
MMP23B
DDX11L1
LOC107984841
C1orf159
MIR200B
GABRD
FAM41C
NADK
MIR6808
ISG15
LOC100506504
LOC105378947
MIR6859-2
MRPL20
LOC100287934
LOC105378949
MIR6726
SLC35E2B
LOC100288175
TTLL10
ANKRD65
ACAP3
PUSL1
TMEM52
TMEM88B
LOC102724312
CALML6
TNFRSF4
LOC100134822
OR4F29
VWA1
LOC100129534
MIR6727
SDF4
ATAD3B
PRKCZ
AGRN
SLC35E2
FAM132A
LOC729737
SKI
FNDC10
MIB2
HES4
MIR6723
LOC100132287
MXRA8
MTND1P23
LOC148413
ATAD3C
AURKAIP1
PLEKHN1
LOC100288069
PERM1
MORN1
OR4F16
LOC105378592
MTND2P28
CDK11B
LOC105378948
TNFRSF18
OR4F5
MIR429
WASH7P
CFAP74
SCNN1D
TMEM240
MIR1302-2
FAM87B
LINC01128
CPSF3L
KLHL17
SSU72
CPTP
RNF223
B3GALT6
LOC107985728
LINC00115
MIR200A
LOC105378591
LOC101928626
LOC100133331
CDK11A
GNB1
LINC01342
FAM138A
TAS1R3
TTLL10-AS1
LOC107985729
LOC284600
CCNL2
MIR6859-1
DVL1
MMP23A
LOC105378589
LOC102725121
FAAP20
LOC100130417
ATAD3A
UBE2J2
NOC2L
|
| dgv49n54 | Chr.1:2151050 - 2289783 on Build GRCh38 | Loss |
LOC105378592
FAAP20
LOC100506504
SKI
PRKCZ
|
| nsv951530 | Chr.1:2153662 - 2229961 on Build GRCh38 | Deletion |
LOC105378592
FAAP20
LOC100506504
SKI
PRKCZ
|
| nsv834557 | Chr.1:2117631 - 2311104 on Build GRCh38 | Loss |
LOC105378592
FAAP20
LOC100506504
SKI
PRKCZ
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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