Genomic Map
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Target Gene Details
Entrez Gene ID: | 79058 |
Gene Name: | ASPSCR1, UBX domain containing tether for SLC2A4 |
Gene Aliases: |
ASPCR1, ASPL, ASPS, RCC17, TUG, UBXD9, UBXN9 |
Location: |
Chr.17:81977550-82018929 on Build GRCh38 |
Assay Gene Location: | Within Exon 19 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| ASPSCR1 | XM_011523601.2 | 16 | 3155 | XP_011521903.1 |
| XM_011523602.2 | 16 | 3110 | XP_011521904.1 | |
| XM_017025036.1 | 16 | 3230 | XP_016880525.1 | |
| XM_017025037.1 | 16 | 3185 | XP_016880526.1 | |
| XM_017025038.1 | 17 | 3241 | XP_016880527.1 | |
| XM_017025039.1 | 17 | 3158 | XP_016880528.1 | |
| XM_017025040.1 | 16 | 3095 | XP_016880529.1 | |
| XM_017025041.1 | 15 | 3098 | XP_016880530.1 |
Target Gene Details
Entrez Gene ID: | 201254 |
Gene Name: | stimulated by retinoic acid 13 |
Gene Aliases: |
CENP-X, CENPX, D9, FAAP10, MHF2 |
Location: |
Chr.17:82018703-82022930 on Build GRCh38 |
Assay Gene Location: | Overlaps - Exon 3 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| STRA13 | NM_001271006.1 | NP_001257935.1 | ||
| NM_001271007.1 | NP_001257936.1 | |||
| NM_144998.3 | NP_659435.2 | |||
| XM_005256339.2 | XP_005256396.1 | |||
| XM_017024326.1 | XP_016879815.1 | |||
| XM_017024327.1 | XP_016879816.1 | |||
| XM_017024328.1 | XP_016879817.1 | |||
| XM_017024329.1 | XP_016879818.1 | |||
| BC009571.1 | AAH09571.1 | |||
| BC011610.1 | AAH11610.1 | |||
| BI837753.1 | ||||
| BQ648002.1 | ||||
| U95006.1 | AAB53638.1 | |||
| U95007.1 | AAB53639.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv952392 | Chr.17:81885825 - 82065724 on Build GRCh38 | Deletion |
 PYCR1
NPB
GPS1
MAFG-AS1
NOTUM
ALYREF
STRA13
SIRT7
ANAPC11
ASPSCR1
PCYT2
RFNG
DUS1L
MAFG
MYADML2
RAC3
DCXR
LRRC45
|
| nsv428351 | Chr.17:81152631 - 83064073 on Build GRCh38 | Gain |
P4HB
CCDC57
PDE6G
HGS
AATK
SLC38A10
STRA13
SNORD134
GCGR
SLC25A10
PPP1R27
MIR4740
ARL16
OGFOD3
MAFG
DCXR
GPS1
RAB40B
AATK-AS1
NARF
TSPAN10
MRPL12
UTS2R
ZNF750
MCRIP1
LOC105371944
SLC16A3
OXLD1
FSCN2
LOC101929511
LOC101929552
CCDC137
MIR6787
FASN
MYADML2
TMEM105
MIR3186
C17orf89
MAFG-AS1
NOTUM
CD7
CSNK1D
NPLOC4
HEXDC
SIRT7
LINC00482
ACTG1
MIR6786
TEPSIN
LOC105371925
RFNG
FN3K
RAC3
SECTM1
PYCR1
NPB
TBCD
LOC100130370
WDR45B
LOC105376790
CEP131
ALYREF
BAHCC1
TEX19
B3GNTL1
ANAPC11
FAAP100
ARHGDIA
LOC105376791
ASPSCR1
FN3KRP
PCYT2
DUS1L
FOXK2
MIR4525
C17orf62
LRRC45
|
| nsv457975 | Chr.17:81991355 - 82086850 on Build GRCh38 | Loss |
GPS1
ASPSCR1
RFNG
DUS1L
STRA13
FASN
RAC3
DCXR
LRRC45
|
| nsv470620 | Chr.17:81516973 - 82064485 on Build GRCh38 | Loss |
P4HB
MAFG-AS1
NOTUM
PDE6G
NPLOC4
HGS
STRA13
SIRT7
GCGR
SLC25A10
PPP1R27
MIR6786
RFNG
ARL16
MAFG
RAC3
DCXR
PYCR1
NPB
GPS1
TSPAN10
MRPL12
ALYREF
ANAPC11
FAAP100
MCRIP1
ARHGDIA
OXLD1
ASPSCR1
FSCN2
PCYT2
DUS1L
CCDC137
MYADML2
LRRC45
|
| dgv5800n54 | Chr.17:82013189 - 82035336 on Build GRCh38 | Loss |
ASPSCR1
STRA13
RAC3
LRRC45
|
| esv21913 | Chr.17:81828123 - 83103548 on Build GRCh38 | Gain+Loss |
P4HB
CCDC57
STRA13
SNORD134
PPP1R27
OGFOD3
MAFG
DCXR
GPS1
RAB40B
NARF
UTS2R
METRNL
ZNF750
MCRIP1
LOC105371944
SLC16A3
LOC101929511
LOC101929552
MIR6787
FASN
MYADML2
MAFG-AS1
NOTUM
CD7
CSNK1D
HEXDC
SIRT7
RFNG
FN3K
RAC3
SECTM1
PYCR1
NPB
TBCD
WDR45B
LOC105376790
ALYREF
TEX19
B3GNTL1
ANAPC11
ARHGDIA
LOC105376791
ASPSCR1
FN3KRP
PCYT2
DUS1L
FOXK2
MIR4525
C17orf62
LRRC45
|
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Additional Information:
For this assay, SNP(s) [rs72861729] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Exonic
Non-exonic
DGV Variation
|
Gene Ontology Categories:
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