Genomic Map
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Target Gene Details
Entrez Gene ID: | 79058 |
Gene Name: | ASPSCR1, UBX domain containing tether for SLC2A4 |
Gene Aliases: |
ASPCR1, ASPL, ASPS, RCC17, TUG, UBXD9, UBXN9 |
Location: |
Chr.17:81977550-82018929 on Build GRCh38 |
Assay Gene Location: | Within Exon 19 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| ASPSCR1 | XM_011523601.2 | 16 | 3155 | XP_011521903.1 |
| XM_011523602.2 | 16 | 3110 | XP_011521904.1 | |
| XM_017025036.1 | 16 | 3230 | XP_016880525.1 | |
| XM_017025037.1 | 16 | 3185 | XP_016880526.1 | |
| XM_017025038.1 | 17 | 3241 | XP_016880527.1 | |
| XM_017025039.1 | 17 | 3158 | XP_016880528.1 | |
| XM_017025040.1 | 16 | 3095 | XP_016880529.1 | |
| XM_017025041.1 | 15 | 3098 | XP_016880530.1 |
Target Gene Details
Entrez Gene ID: | 201254 |
Gene Name: | stimulated by retinoic acid 13 |
Gene Aliases: |
CENP-X, CENPX, D9, FAAP10, MHF2 |
Location: |
Chr.17:82018703-82022930 on Build GRCh38 |
Assay Gene Location: | Overlaps - Exon 3 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| STRA13 | NM_001271006.1 | NP_001257935.1 | ||
| NM_001271007.1 | NP_001257936.1 | |||
| NM_144998.3 | NP_659435.2 | |||
| XM_005256339.2 | XP_005256396.1 | |||
| XM_017024326.1 | XP_016879815.1 | |||
| XM_017024327.1 | XP_016879816.1 | |||
| XM_017024328.1 | XP_016879817.1 | |||
| XM_017024329.1 | XP_016879818.1 | |||
| BC009571.1 | AAH09571.1 | |||
| BC011610.1 | AAH11610.1 | |||
| BI837753.1 | ||||
| BQ648002.1 | ||||
| U95006.1 | AAB53638.1 | |||
| U95007.1 | AAB53639.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv952392 | Chr.17:81885825 - 82065724 on Build GRCh38 | Deletion |
 RFNG
MAFG-AS1
PYCR1
ALYREF
ANAPC11
SIRT7
ASPSCR1
MAFG
DUS1L
NOTUM
STRA13
MYADML2
NPB
DCXR
PCYT2
GPS1
RAC3
LRRC45
|
| nsv576183 | Chr.17:81991355 - 82086850 on Build GRCh38 | Loss |
FASN
STRA13
RFNG
DCXR
GPS1
ASPSCR1
RAC3
DUS1L
LRRC45
|
| nsv428351 | Chr.17:81152631 - 83064073 on Build GRCh38 | Gain |
CD7
HEXDC
SIRT7
LOC105376791
DUS1L
TMEM105
SLC38A10
ACTG1
RAB40B
TSPAN10
SECTM1
DCXR
PCYT2
CCDC137
C17orf62
TEX19
LOC100130370
FOXK2
AATK-AS1
ASPSCR1
MAFG
MIR6787
FAAP100
CEP131
NOTUM
MRPL12
BAHCC1
FN3KRP
MIR4525
LOC101929511
OXLD1
GPS1
ARL16
HGS
RAC3
LOC101929552
MIR6786
RFNG
MCRIP1
NARF
ALYREF
TEPSIN
ANAPC11
PDE6G
B3GNTL1
FASN
STRA13
P4HB
SNORD134
AATK
PPP1R27
FN3K
GCGR
UTS2R
SLC16A3
LRRC45
ZNF750
SLC25A10
CSNK1D
MAFG-AS1
PYCR1
MIR3186
LOC105376790
OGFOD3
WDR45B
LINC00482
NPLOC4
ARHGDIA
MYADML2
FSCN2
LOC105371925
NPB
CCDC57
LOC105371944
C17orf89
TBCD
MIR4740
|
| nsv470620 | Chr.17:81516973 - 82064485 on Build GRCh38 | Loss |
MIR6786
RFNG
MCRIP1
ALYREF
ANAPC11
SIRT7
PDE6G
DUS1L
STRA13
P4HB
TSPAN10
DCXR
PCYT2
PPP1R27
GCGR
CCDC137
LRRC45
SLC25A10
MAFG-AS1
PYCR1
ASPSCR1
MAFG
FAAP100
NOTUM
MRPL12
NPLOC4
ARHGDIA
MYADML2
FSCN2
NPB
OXLD1
GPS1
ARL16
HGS
RAC3
|
| dgv5800n54 | Chr.17:82013189 - 82035336 on Build GRCh38 | Loss |
STRA13
ASPSCR1
RAC3
LRRC45
|
| esv21913 | Chr.17:81828123 - 83103548 on Build GRCh38 | Gain+Loss |
CD7
HEXDC
SIRT7
LOC105376791
DUS1L
RAB40B
SECTM1
DCXR
PCYT2
C17orf62
TEX19
FOXK2
ASPSCR1
MAFG
MIR6787
NOTUM
FN3KRP
MIR4525
METRNL
LOC101929511
GPS1
RAC3
LOC101929552
RFNG
MCRIP1
NARF
ALYREF
ANAPC11
B3GNTL1
FASN
STRA13
P4HB
SNORD134
PPP1R27
FN3K
UTS2R
SLC16A3
LRRC45
ZNF750
CSNK1D
MAFG-AS1
PYCR1
LOC105376790
OGFOD3
WDR45B
ARHGDIA
MYADML2
NPB
CCDC57
LOC105371944
TBCD
|
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Additional Information:
For this assay, SNP(s) [rs72861729] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Exonic
Non-exonic
DGV Variation
|
Gene Ontology Categories:
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