Hs01047381_cn

• Gene Symbol: CDHR5
• Assay Reference Genome Location: Chr.11:619839 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 53841
• Gene Name: cadherin related family member 5
• Gene Aliases: MLPCDH, MU-PCDH, MUCDHL, MUPCDH
• Location: Chr.11:616565-625067 on Build GRCh38
• Assay Gene Location: Within Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDHR5	NM_001171968.1	10	1186	NP_001165439.1
	NM_021924.4	10	1186	NP_068743.2
	NM_031264.3	10	1186	NP_112554.2
	XM_006718253.3	10	1086	XP_006718316.1
	XM_011520188.2	10	1086	XP_011518490.1
	XM_011520189.2	10	1086	XP_011518491.1
	XM_011520190.2	10	1086	XP_011518492.1
	XM_011520191.2	10	1086	XP_011518493.1
	AF258675.1	11	1342	AAG16732.1
	AF258676.1	11	1342	AAG16733.1
	AF276242.1	10	1021	AAG30821.1
	AF301909.1	10	1021	AAG33495.1
	AK000226.1	10	1204	BAA91021.1
	AK000384.1	10	1091	BAA91130.1
	AK025012.1	3	173	BAB15052.1
	AK300991.1	11	1038
	AK308040.1	10	1110
	AK309157.1	9	981
	AY358368.1	10	1043	AAQ88734.1
	BC038405.1	10	1043	AAH38405.1
	DQ491193.1	10	1093

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	LRRC56 PHRF1 LMNTD2 LOC101059906 LOC143666 IRF7 CDHR5 MIR210HG MIR210 RASSF7 SCT HRAS
nsv552861	Chr.11:589246 - 662407 on Build GRCh38	Loss	PHRF1 DRD4 DEAF1 IRF7 CDHR5 SCT
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	LRRC56 PHRF1 MUC2 RPLP2 SNORA52 LOC101059906 AP2A2 CEND1 HRAS TSPAN4 LOC101927503 LMNTD2 LOC143666 PIDD1 TOLLIP POLR2L MIR6744 PDDC1 MIR210HG MIR210 ANO9 SCT DEAF1 RNH1 MUC5AC PANO1 MUC6 TOLLIP-AS1 MUC5B PTDSS2 DRD4 CD151 CRACR2B SLC25A22 EPS8L2 IRF7 CHID1 CDHR5 TALDO1 LOC171391 TMEM80 PNPLA2 SIGIRR RASSF7
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	LRRC56 PHRF1 DEAF1 HRAS DRD4 LMNTD2 LOC143666 IRF7 CDHR5 MIR210HG MIR210 RASSF7 SCT
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	LRRC56 PHRF1 RPLP2 SNORA52 LOC101059906 AP2A2 CEND1 HRAS TSPAN4 LMNTD2 LOC143666 PIDD1 POLR2L PDDC1 MIR210HG MIR210 ANO9 SCT DEAF1 RNH1 PANO1 PKP3 B4GALNT4 PTDSS2 DRD4 CD151 CRACR2B SLC25A22 EPS8L2 IRF7 CHID1 CDHR5 TALDO1 LOC171391 TMEM80 PNPLA2 SIGIRR RASSF7
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	LRRC56 PHRF1 DEAF1 RNH1 LOC101059906 HRAS PTDSS2 DRD4 LMNTD2 LOC143666 IRF7 CDHR5 MIR210HG MIR210 RASSF7 SCT
dgv1524n54	Chr.11:610277 - 619789 on Build GRCh38	Loss	PHRF1 IRF7 CDHR5
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	LRRC56 PHRF1 RPLP2 SNORA52 LOC101059906 CEND1 HRAS TSPAN4 LMNTD2 LOC143666 PIDD1 POLR2L PDDC1 MIR210HG MIR210 SCT DEAF1 RNH1 PANO1 PTDSS2 DRD4 CD151 CRACR2B SLC25A22 EPS8L2 IRF7 CHID1 CDHR5 TALDO1 LOC171391 TMEM80 PNPLA2 RASSF7
nsv552856	Chr.11:549119 - 619789 on Build GRCh38	Gain	LRRC56 PHRF1 LMNTD2 LOC143666 IRF7 CDHR5 MIR210HG MIR210 RASSF7
nsv552865	Chr.11:612843 - 626730 on Build GRCh38	Loss	IRF7 CDHR5 SCT
dgv1522n54	Chr.11:557342 - 656845 on Build GRCh38	Loss	PHRF1 DRD4 DEAF1 LMNTD2 LOC143666 IRF7 CDHR5 MIR210HG MIR210 RASSF7 SCT
nsv467634	Chr.11:511805 - 619789 on Build GRCh38	Loss	LRRC56 PHRF1 LMNTD2 LOC101059906 LOC143666 IRF7 CDHR5 MIR210HG MIR210 RASSF7 HRAS
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	LRRC56 PHRF1 RNH1 PGGHG PKP3 LOC101059906 IFITM2 B4GALNT4 IFITM1 IFITM5 IFITM3 HRAS PTDSS2 LMNTD2 LOC143666 IRF7 CDHR5 MIR210HG MIR210 SIGIRR ANO9 RASSF7
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	LRRC56 PHRF1 MUC2 RPLP2 SNORA52 LOC101059906 AP2A2 CEND1 HRAS TSPAN4 LOC101927503 LMNTD2 LOC143666 PIDD1 TOLLIP POLR2L MIR6744 PDDC1 MIR210HG MIR210 ANO9 SCT DEAF1 RNH1 MUC5AC PANO1 PKP3 MUC6 B4GALNT4 MUC5B PTDSS2 DRD4 CD151 CRACR2B SLC25A22 EPS8L2 IRF7 CHID1 CDHR5 TALDO1 LOC171391 TMEM80 PNPLA2 SIGIRR RASSF7
nsv552862	Chr.11:605856 - 619789 on Build GRCh38	Loss	PHRF1 IRF7 CDHR5
esv2762889	Chr.11:606294 - 653614 on Build GRCh38	Loss	PHRF1 DRD4 DEAF1 IRF7 CDHR5 SCT
nsv528415	Chr.11:558884 - 620599 on Build GRCh38	Loss	PHRF1 LMNTD2 LOC143666 IRF7 CDHR5 MIR210HG MIR210 RASSF7

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
cell differentiation
regulation of microvillus length
intermicrovillar adhesion

Function(s)

calcium ion binding
protein binding
beta-catenin binding
cell adhesion molecule binding