Hs01047381_cn

• Gene Symbol: CDHR5
• Assay Reference Genome Location: Chr.11:619839 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 53841
• Gene Name: cadherin related family member 5
• Gene Aliases: MLPCDH, MU-PCDH, MUCDHL, MUPCDH
• Location: Chr.11:616565-625067 on Build GRCh38
• Assay Gene Location: Within Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDHR5	NM_001171968.1	10	1186	NP_001165439.1
	NM_021924.4	10	1186	NP_068743.2
	NM_031264.3	10	1186	NP_112554.2
	XM_006718253.3	10	1086	XP_006718316.1
	XM_011520188.2	10	1086	XP_011518490.1
	XM_011520189.2	10	1086	XP_011518491.1
	XM_011520190.2	10	1086	XP_011518492.1
	XM_011520191.2	10	1086	XP_011518493.1
	AF258675.1	11	1342	AAG16732.1
	AF258676.1	11	1342	AAG16733.1
	AF276242.1	10	1021	AAG30821.1
	AF301909.1	10	1021	AAG33495.1
	AK000226.1	10	1204	BAA91021.1
	AK000384.1	10	1091	BAA91130.1
	AK025012.1	3	173	BAB15052.1
	AK300991.1	11	1038
	AK308040.1	10	1110
	AK309157.1	9	981
	AY358368.1	10	1043	AAQ88734.1
	BC038405.1	10	1043	AAH38405.1
	DQ491193.1	10	1093

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	SCT MIR210 RASSF7 LOC101059906 LOC143666 HRAS MIR210HG LRRC56 IRF7 CDHR5 PHRF1 LMNTD2
nsv552861	Chr.11:589246 - 662407 on Build GRCh38	Loss	SCT DEAF1 IRF7 CDHR5 PHRF1 DRD4
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	SCT LOC101927503 PNPLA2 LOC143666 POLR2L MIR210HG IRF7 TMEM80 DRD4 RPLP2 AP2A2 MUC5B RASSF7 ANO9 TOLLIP CEND1 CHID1 MUC6 LOC171391 PDDC1 MIR210 LOC101059906 RNH1 PTDSS2 MUC2 TSPAN4 LRRC56 SNORA52 CRACR2B PHRF1 TOLLIP-AS1 SLC25A22 MIR6744 DEAF1 PIDD1 EPS8L2 TALDO1 HRAS PANO1 SIGIRR MUC5AC CD151 CDHR5 LMNTD2
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	SCT MIR210 LOC143666 MIR210HG LRRC56 IRF7 PHRF1 DRD4 RASSF7 DEAF1 HRAS CDHR5 LMNTD2
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	SCT MIR210 LOC101059906 LOC143666 RNH1 PTDSS2 MIR210HG LRRC56 IRF7 PHRF1 DRD4 RASSF7 DEAF1 HRAS CDHR5 LMNTD2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	SCT PNPLA2 LOC143666 POLR2L MIR210HG IRF7 TMEM80 DRD4 RPLP2 AP2A2 RASSF7 ANO9 B4GALNT4 CEND1 CHID1 LOC171391 PKP3 PDDC1 MIR210 LOC101059906 RNH1 PTDSS2 TSPAN4 LRRC56 SNORA52 CRACR2B PHRF1 SLC25A22 DEAF1 PIDD1 EPS8L2 TALDO1 HRAS PANO1 SIGIRR CD151 CDHR5 LMNTD2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	SCT PNPLA2 LOC143666 POLR2L MIR210HG IRF7 TMEM80 DRD4 RPLP2 RASSF7 CEND1 CHID1 LOC171391 PDDC1 MIR210 LOC101059906 RNH1 PTDSS2 TSPAN4 LRRC56 SNORA52 CRACR2B PHRF1 SLC25A22 DEAF1 PIDD1 EPS8L2 TALDO1 HRAS PANO1 CD151 CDHR5 LMNTD2
dgv1524n54	Chr.11:610277 - 619789 on Build GRCh38	Loss	IRF7 CDHR5 PHRF1
nsv552856	Chr.11:549119 - 619789 on Build GRCh38	Gain	MIR210 RASSF7 LOC143666 MIR210HG LRRC56 IRF7 CDHR5 PHRF1 LMNTD2
nsv552854	Chr.11:511805 - 619789 on Build GRCh38	Loss	MIR210 RASSF7 LOC101059906 LOC143666 HRAS MIR210HG LRRC56 IRF7 CDHR5 PHRF1 LMNTD2
dgv1523n54	Chr.11:557342 - 656940 on Build GRCh38	Gain	SCT MIR210 RASSF7 DEAF1 LOC143666 MIR210HG IRF7 CDHR5 PHRF1 DRD4 LMNTD2
nsv552865	Chr.11:612843 - 626730 on Build GRCh38	Loss	SCT IRF7 CDHR5
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	IFITM3 PKP3 MIR210 LOC101059906 LOC143666 RNH1 PTDSS2 MIR210HG LRRC56 IRF7 PHRF1 IFITM2 RASSF7 ANO9 IFITM5 HRAS SIGIRR PGGHG B4GALNT4 CDHR5 IFITM1 LMNTD2
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	SCT LOC101927503 PNPLA2 LOC143666 POLR2L MIR210HG IRF7 TMEM80 DRD4 RPLP2 AP2A2 MUC5B RASSF7 ANO9 TOLLIP B4GALNT4 CEND1 CHID1 MUC6 LOC171391 PKP3 PDDC1 MIR210 LOC101059906 RNH1 PTDSS2 MUC2 TSPAN4 LRRC56 SNORA52 CRACR2B PHRF1 SLC25A22 MIR6744 DEAF1 PIDD1 EPS8L2 TALDO1 HRAS PANO1 SIGIRR MUC5AC CD151 CDHR5 LMNTD2
nsv552862	Chr.11:605856 - 619789 on Build GRCh38	Loss	IRF7 CDHR5 PHRF1
esv2762889	Chr.11:606294 - 653614 on Build GRCh38	Loss	SCT DEAF1 IRF7 CDHR5 PHRF1 DRD4
nsv528415	Chr.11:558884 - 620599 on Build GRCh38	Loss	MIR210 RASSF7 LOC143666 MIR210HG IRF7 CDHR5 PHRF1 LMNTD2

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
cell differentiation
regulation of microvillus length
intermicrovillar adhesion

Function(s)

calcium ion binding
protein binding
beta-catenin binding
cell adhesion molecule binding