Hs01050845_cn

• Gene Symbol: PCDHB9
• Assay Reference Genome Location: Chr.5:141190791 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56127
• Gene Name: protocadherin beta 9
• Gene Aliases: PCDH-BETA9, PCDH3H
• Location: Chr.5:141187127-141191538 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHB9	NM_019119.4	1	3665	NP_061992.3
	AB208959.1	1	3231	BAD92196.1
	AF217749.1	1	3473	AAF81913.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3606971	Chr.5:141188879 - 141193129 on Build GRCh38	Loss	PCDHB9 PCDHB10
esv2730844	Chr.5:141183869 - 141194030 on Build GRCh38	Deletion	PCDHB9 PCDHB16 PCDHB10
nsv599919	Chr.5:141182193 - 141212836 on Build GRCh38	Loss	PCDHB9 PCDHB12 PCDHB16 PCDHB11 PCDHB10
nsv5031	Chr.5:141177713 - 141202707 on Build GRCh38	Insertion	PCDHB9 PCDHB16 PCDHB11 PCDHB8 PCDHB10
nsv823266	Chr.5:141156966 - 141222863 on Build GRCh38	Gain	PCDHB9 PCDHB12 PCDHB17P PCDHB16 PCDHB11 PCDHB13 PCDHB14 PCDHB7 PCDHB8 PCDHB10
esv2763501	Chr.5:141190118 - 141191622 on Build GRCh38	Loss	PCDHB9
nsv1024594	Chr.5:141167591 - 141243953 on Build GRCh38	Loss	PCDHB9 PCDHB12 PCDHB16 PCDHB11 PCDHB18P PCDHB13 PCDHB14 PCDHB19P PCDHB7 PCDHB8 PCDHB10
nsv509092	Chr.5:141155922 - 141192231 on Build GRCh38	Insertion	PCDHB9 PCDHB17P PCDHB16 PCDHB7 PCDHB8
nsv471634	Chr.5:141106394 - 141258375 on Build GRCh38	Gain+Loss	PCDHB12 PCDHB17P PCDHB5 PCDHB6 PCDHB4 PCDHB18P PCDHB8 PCDHB9 PCDHB16 PCDHB11 PCDHB13 PCDHB14 PCDHB19P PCDHB7 PCDHB10 PCDHB15
nsv428127	Chr.5:141016768 - 141319173 on Build GRCh38	Loss	PCDHB12 PCDHB17P PCDHB5 TAF7 PCDHB6 PCDHB4 PCDHB18P PCDHB1 LOC101926905 PCDHB8 PCDHB9 PCDHB3 PCDHB16 PCDHB11 SLC25A2 PCDHB13 PCDHB14 PCDHB19P PCDHB7 PCDHB10 PCDHB2 PCDHB15
dgv958e201	Chr.5:141174165 - 141215536 on Build GRCh38	Deletion	PCDHB9 PCDHB12 PCDHB16 PCDHB11 PCDHB13 PCDHB7 PCDHB8 PCDHB10
esv2730845	Chr.5:141189443 - 141194727 on Build GRCh38	Deletion	PCDHB9 PCDHB10
nsv599908	Chr.5:141139584 - 141250122 on Build GRCh38	Loss	PCDHB12 PCDHB17P PCDHB6 PCDHB18P PCDHB8 PCDHB9 PCDHB16 PCDHB11 PCDHB13 PCDHB14 PCDHB19P PCDHB7 PCDHB10 PCDHB15
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB12 PCDHGB7 PCDHGA8 LOC101926905 PCDHA11 PCDHA12 PCDHA10 PCDHA13 PCDHGB4 PCDHGA7 PCDHGA10 SLC25A2 PCDHAC1 PCDHB7 PCDHB10 PCDHA4 PCDHB2 PCDHA9 PCDHB15 TAF7 PCDHGB2 PCDHB6 PCDHGA11 PCDHA6 PCDHGA2 PCDHB9 PCDHGA3 PCDHGA4 PCDHA8 PCDHGB5 PCDHB17P PCDHB5 PCDHGA1 PCDHB1 PCDHGB1 PCDHAC2 PCDHGA9 PCDHB3 PCDHB16 PCDHB11 PCDHB13 PCDHA2 PCDHGB6 PCDHA1 PCDHB4 PCDHB18P PCDHB8 PCDHGB8P PCDHA5 PCDHGA12 PCDHGA5 PCDHB14 PCDHGA6 PCDHB19P PCDHA3 PCDHGB3 PCDHA7
nsv499084	Chr.5:141175152 - 141193769 on Build GRCh38	Gain	PCDHB9 PCDHB16 PCDHB7 PCDHB8 PCDHB10
esv2664767	Chr.5:141177668 - 141213756 on Build GRCh38	Deletion	PCDHB9 PCDHB12 PCDHB16 PCDHB11 PCDHB8 PCDHB10

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
chemical synaptic transmission
synapse assembly
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Function(s)

calcium ion binding