Hs01050845_cn

• Gene Symbol: PCDHB9
• Assay Reference Genome Location: Chr.5:141190791 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56127
• Gene Name: protocadherin beta 9
• Gene Aliases: PCDH-BETA9, PCDH3H
• Location: Chr.5:141187127-141191538 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHB9	NM_019119.4	1	3665	NP_061992.3
	AB208959.1	1	3231	BAD92196.1
	AF217749.1	1	3473	AAF81913.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv599919	Chr.5:141182193 - 141212836 on Build GRCh38	Loss	PCDHB11 PCDHB16 PCDHB9 PCDHB12 PCDHB10
esv2730844	Chr.5:141183869 - 141194030 on Build GRCh38	Deletion	PCDHB16 PCDHB9 PCDHB10
esv3606972	Chr.5:141188879 - 141193129 on Build GRCh38	Gain	PCDHB9 PCDHB10
nsv823266	Chr.5:141156966 - 141222863 on Build GRCh38	Gain	PCDHB11 PCDHB16 PCDHB17P PCDHB14 PCDHB13 PCDHB9 PCDHB8 PCDHB7 PCDHB12 PCDHB10
nsv5031	Chr.5:141177713 - 141202707 on Build GRCh38	Insertion	PCDHB11 PCDHB16 PCDHB9 PCDHB8 PCDHB10
esv2763501	Chr.5:141190118 - 141191622 on Build GRCh38	Loss	PCDHB9
nsv428127	Chr.5:141016768 - 141319173 on Build GRCh38	Loss	PCDHB18P PCDHB11 PCDHB16 PCDHB1 PCDHB14 PCDHB13 PCDHB8 PCDHB12 PCDHB6 PCDHB10 PCDHB19P PCDHB17P PCDHB3 PCDHB15 PCDHB2 PCDHB9 SLC25A2 PCDHB5 PCDHB7 TAF7 LOC101926905 PCDHB4
nsv471634	Chr.5:141106394 - 141258375 on Build GRCh38	Gain+Loss	PCDHB18P PCDHB11 PCDHB16 PCDHB14 PCDHB13 PCDHB8 PCDHB12 PCDHB6 PCDHB10 PCDHB19P PCDHB17P PCDHB15 PCDHB9 PCDHB5 PCDHB7 PCDHB4
nsv509092	Chr.5:141155922 - 141192231 on Build GRCh38	Insertion	PCDHB16 PCDHB17P PCDHB9 PCDHB8 PCDHB7
nsv1031792	Chr.5:141167591 - 141196668 on Build GRCh38	Loss	PCDHB16 PCDHB9 PCDHB8 PCDHB7 PCDHB10
dgv958e201	Chr.5:141174165 - 141215536 on Build GRCh38	Deletion	PCDHB11 PCDHB16 PCDHB13 PCDHB9 PCDHB8 PCDHB7 PCDHB12 PCDHB10
esv2730845	Chr.5:141189443 - 141194727 on Build GRCh38	Deletion	PCDHB9 PCDHB10
nsv599908	Chr.5:141139584 - 141250122 on Build GRCh38	Loss	PCDHB18P PCDHB11 PCDHB16 PCDHB14 PCDHB13 PCDHB8 PCDHB12 PCDHB6 PCDHB10 PCDHB19P PCDHB17P PCDHB15 PCDHB9 PCDHB7
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHAC1 PCDHGA11 PCDHGB8P PCDHB6 PCDHGA8 PCDHA7 PCDHA6 PCDHGA4 PCDHA10 PCDHB5 PCDHGB2 PCDHA8 PCDHA13 PCDHA12 PCDHGA5 PCDHGA10 PCDHGB5 PCDHB10 PCDHGA12 PCDHGA1 PCDHB2 PCDHGA9 PCDHGB4 PCDHB4 PCDHGA2 PCDHB11 PCDHB1 PCDHGA3 PCDHB14 PCDHA3 PCDHB8 PCDHB12 PCDHB19P PCDHB17P PCDHGB1 PCDHA11 PCDHGB3 PCDHB9 PCDHGA7 PCDHAC2 PCDHA4 LOC101926905 PCDHGA6 PCDHB18P PCDHB16 PCDHA5 PCDHB13 PCDHGB7 PCDHA1 PCDHGB6 PCDHB3 PCDHA2 PCDHB15 PCDHA9 SLC25A2 PCDHB7 TAF7
nsv499084	Chr.5:141175152 - 141193769 on Build GRCh38	Gain	PCDHB16 PCDHB9 PCDHB8 PCDHB7 PCDHB10
esv2664767	Chr.5:141177668 - 141213756 on Build GRCh38	Deletion	PCDHB11 PCDHB16 PCDHB9 PCDHB8 PCDHB12 PCDHB10

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
chemical synaptic transmission
synapse assembly
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Function(s)

calcium ion binding