Hs01064961_cn

• Gene Symbol: LOC339059
• Assay Reference Genome Location: Chr.16:88744321 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 339059
• Gene Name: uncharacterized LOC339059
• Gene Aliases: -
• Location: Chr.16:88742767-88745748 on Build GRCh38
• Assay Gene Location: Overlaps Exon 2 - Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC339059	NR_120387.1
	AK097767.1			BAC05165.1
	BC111769.1			AAI11770.1

Target Gene Details

• Entrez Gene ID: 9780
• Gene Name: piezo type mechanosensitive ion channel component 1
• Gene Aliases: DHS, FAM38A, LMPH3, Mib
• Location: Chr.16:88715338-88785220 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PIEZO1	NM_001142864.3			NP_001136336.2
	HY165228.1
	KC602455.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	LOC100129697 CDH15 MIR4722 LOC105371409 CDT1 LOC100289580 SLC22A31 GALNS PIEZO1 TRAPPC2L LOC107987238 PABPN1L ZNF778 LOC339059 CTU2 LOC101927793 LINC00304 CBFA2T3 LOC400558 APRT ACSF3
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	LOC339059 CTU2 MIR4722 MVD LOC100289580 CYBA PIEZO1 RNF166 SNAI3 SNAI3-AS1
nsv471114	Chr.16:88688461 - 88756339 on Build GRCh38	Gain	LOC339059 CTU2 MIR4722 LOC100289580 PIEZO1 RNF166
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	LOC339059 CTU2 MIR4722 CDT1 LOC100289580 GALNS PIEZO1 LOC107987238 RNF166 SNAI3 SNAI3-AS1 APRT
nsv517643	Chr.16:88713767 - 88756339 on Build GRCh38	Loss	LOC339059 CTU2 MIR4722 LOC100289580 PIEZO1
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	LOC339059 CTU2 MIR4722 LOC100289580 PIEZO1 RNF166 SNAI3 SNAI3-AS1
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	LOC100129697 LOC100287036 CDH15 ANKRD11 LOC105371409 CDT1 LOC100289580 SLC22A31 GALNS PIEZO1 TRAPPC2L LOC107987238 PABPN1L LOC105371414 ZNF778 LOC339059 LOC101927793 LINC00304 CBFA2T3 LOC400558 APRT ACSF3
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	ZC3H18-AS1 ZNF469 MIR4722 ZFPM1 MVD LOC100289580 PIEZO1 RNF166 IL17C SNAI3 LOC339059 CTU2 ZC3H18 CYBA MIR5189 SNAI3-AS1 LOC107984862
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	FANCA LOC100129697 SLC22A31 PIEZO1 TRAPPC2L IL17C VPS9D1 LOC105371414 ZNF778 GAS8-AS1 SPIRE2 LINC00304 LOC105371419 DEF8 SNAI3-AS1 LOC101927817 CDH15 CHMP1A TUBB8P7 RNF166 FAM157C MC1R AFG3L1P CBFA2T3 VPS9D1-AS1 TCF25 DPEP1 ACSF3 ANKRD11 CDK10 TUBB3 MIR4722 CDT1 MVD LOC100289580 CTU2 ZNF276 CYBA CENPBD1 LOC400558 SPATA33 LOC100287036 SPG7 LOC105371409 SNORD68 GALNS LOC107987238 GAS8 PABPN1L URAHP SNAI3 DBNDD1 LOC107984817 RPL13 LOC339059 LOC101927793 PRDM7 SPATA2L CPNE7 APRT
nsv1160442	Chr.16:88708161 - 88778524 on Build GRCh38	Deletion	LOC339059 CTU2 MIR4722 LOC100289580 PIEZO1
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	LOC100129697 MIR4722 LOC105371409 CDT1 LOC100289580 GALNS PIEZO1 TRAPPC2L LOC107987238 PABPN1L LOC339059 CTU2 LOC101927793 CBFA2T3 APRT

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cation transport
positive regulation of integrin activation
positive regulation of cell-cell adhesion mediated by integrin
cation transmembrane transport

Function(s)

cation channel activity
mechanically-gated ion channel activity