Hs01064961_cn

• Gene Symbol: LOC339059
• Assay Reference Genome Location: Chr.16:88744321 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 339059
• Gene Name: uncharacterized LOC339059
• Gene Aliases: -
• Location: Chr.16:88742767-88745748 on Build GRCh38
• Assay Gene Location: Overlaps Exon 2 - Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC339059	NR_120387.1
	AK097767.1			BAC05165.1
	BC111769.1			AAI11770.1

Target Gene Details

• Entrez Gene ID: 9780
• Gene Name: piezo type mechanosensitive ion channel component 1
• Gene Aliases: DHS, FAM38A, LMPH3, Mib
• Location: Chr.16:88715338-88785220 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PIEZO1	NM_001142864.3			NP_001136336.2
	HY165228.1
	KC602455.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	LOC101927793 LOC400558 CBFA2T3 APRT CTU2 ACSF3 CDT1 LOC339059 CDH15 LINC00304 LOC107987238 LOC100289580 SLC22A31 ZNF778 PIEZO1 MIR4722 PABPN1L TRAPPC2L LOC105371409 LOC100129697 GALNS
nsv471114	Chr.16:88688461 - 88756339 on Build GRCh38	Gain	PIEZO1 MIR4722 CTU2 RNF166 LOC339059 LOC100289580
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	PIEZO1 MIR4722 CTU2 SNAI3 RNF166 MVD LOC339059 SNAI3-AS1 CYBA LOC100289580
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	PIEZO1 APRT MIR4722 CTU2 SNAI3 RNF166 CDT1 LOC339059 SNAI3-AS1 LOC107987238 GALNS LOC100289580
nsv517643	Chr.16:88713767 - 88756339 on Build GRCh38	Loss	PIEZO1 MIR4722 CTU2 LOC339059 LOC100289580
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	PIEZO1 MIR4722 CTU2 SNAI3 RNF166 LOC339059 SNAI3-AS1 LOC100289580
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	LOC101927793 LOC100287036 LOC400558 CBFA2T3 APRT ACSF3 CDT1 LOC339059 CDH15 LOC105371414 LINC00304 LOC107987238 LOC100289580 SLC22A31 ZNF778 PIEZO1 ANKRD11 PABPN1L TRAPPC2L LOC105371409 LOC100129697 GALNS
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	ZFPM1 CTU2 ZC3H18 RNF166 ZC3H18-AS1 LOC339059 SNAI3-AS1 LOC100289580 PIEZO1 MIR4722 IL17C ZNF469 SNAI3 MVD LOC107984862 MIR5189 CYBA
nsv1160442	Chr.16:88708161 - 88778524 on Build GRCh38	Deletion	PIEZO1 MIR4722 CTU2 LOC339059 LOC100289580
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC101927793 DBNDD1 CDK10 GAS8 RNF166 AFG3L1P PIEZO1 MIR4722 IL17C MVD PABPN1L LOC105371409 SPATA33 DPEP1 CPNE7 TUBB8P7 SLC22A31 PRDM7 FAM157C URAHP LOC107984817 TRAPPC2L ZNF276 TCF25 GALNS FANCA LOC400558 CBFA2T3 VPS9D1 DEF8 SPATA2L SPIRE2 CDT1 LOC339059 LOC105371414 SNAI3-AS1 GAS8-AS1 LOC107987238 CHMP1A LOC100289580 SNORD68 SNAI3 TUBB3 ANKRD11 SPG7 LOC101927817 VPS9D1-AS1 CYBA LOC100287036 APRT CTU2 LOC105371419 ACSF3 MC1R CDH15 LINC00304 ZNF778 CENPBD1 RPL13 LOC100129697
dgv3065n100	Chr.16:88711587 - 88927172 on Build GRCh38	Gain	LOC101927793 CBFA2T3 APRT CTU2 CDT1 LOC339059 LOC107987238 LOC100289580 PIEZO1 MIR4722 PABPN1L TRAPPC2L GALNS

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cation transport
positive regulation of integrin activation
positive regulation of cell-cell adhesion mediated by integrin
cation transmembrane transport

Function(s)

cation channel activity
mechanically-gated ion channel activity