Hs01075552_cn

• Gene Symbol: KDM5D
• Assay Reference Genome Location: Chr.Y:19706197 on build GRCh38
• Cytoband: Yq11.223

Target Gene Details

• Entrez Gene ID: 8284
• Gene Name: lysine demethylase 5D
• Gene Aliases: HY, HYA, JARID1D, SMCY
• Location: Chr.Y:19692495-19745347 on Build GRCh38
• Assay Gene Location: Within Exon 28

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
KDM5D	NM_001146705.1	28	4799	NP_001140177.1
	NM_001146706.1	26	4535	NP_001140178.1
	NM_004653.4	27	4706	NP_004644.2
	XM_005262560.2	26	4979	XP_005262617.1
	XM_005262561.2	27	4883	XP_005262618.1
	XM_011531468.2	27	5036	XP_011529770.1
	AK095923.1	11	1909
	AK127269.1	15	4623
	BC132721.1	27	4629
	BC144102.1	28	4722
	BC146767.1	26	4357
	BX648643.1	12	3169
	D87072.1	26	4357
	U52191.1	27	4693	AAC50806.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv10025	Chr.Y:18865177 - 20859250 on Build GRCh38	Gain	BCORP1 KDM5D CD24P4 LOC107987336 EIF1AY LOC107987345 RPS4Y2 TXLNGY TTTY10 TTTY14

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

histone modifying enzyme

Gene Ontology Categories:

Process(es)

T cell antigen processing and presentation
histone H3-K4 demethylation
oxidation-reduction process

Function(s)

DNA binding
zinc ion binding
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
histone demethylase activity
histone demethylase activity (H3-K4 specific)