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See other ATP2A1 CNV Assays ›
Gene Symbol
ATP2A1
Assay Reference Genome
Location

Chr.16:28894868 on build GRCh38
Cytoband
16p11.2
Assay ID Hs01086542_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 487

Gene Name:

 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1

Gene Aliases:

 ATP2A, SERCA1

Location:

 Chr.16:28878488-28904509 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 12 - Exon 13
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATP2A1 NM_001286075.1 NP_001273004.1
NM_004320.4 NP_004311.1
NM_173201.3 NP_775293.1
AK128456.1
AK291314.1
BC037354.1 AAH37354.1
BX537389.1 CAD97631.1
BX537784.1 CAD97841.1
BX647365.1
BX647366.1
BX647367.1
BX647368.1
BX648544.1
BX649072.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4987n54 Chr.16:28824884 - 29032129 on Build GRCh38 Gain ATXN2L ATP2A1-AS1 LAT ATP2A1 SPNS1 NFATC2IP MIR4721 SH2B1 CD19 RABEP2 TUFM MIR4517
esv3892826 Chr.16:28814728 - 29032129 on Build GRCh38 Gain+Loss ATXN2L ATP2A1-AS1 LAT ATP2A1 SPNS1 NFATC2IP MIR4721 SH2B1 CD19 RABEP2 TUFM MIR4517
esv3638349 Chr.16:28860611 - 28907894 on Build GRCh38 Gain ATP2A1-AS1 ATP2A1 SH2B1 RABEP2
esv2758640 Chr.16:28163817 - 29139232 on Build GRCh38 Gain+Loss MIR6862-1 IL27 CLN3 MIR4517 NPIPB9 NPIPB8 ATP2A1 SBK1 NFATC2IP APOBR CD19 EIF3C NUPR1 ATXN2L NPIPB6 LAT EIF3CL SPNS1 RRN3P2 MIR6862-2 MIR4721 SH2B1 RABEP2 SULT1A1 TUFM ATP2A1-AS1 SULT1A2 XPO6 NPIP LOC101928215 SGF29
nsv519100 Chr.16:28826194 - 29032129 on Build GRCh38 Gain ATXN2L ATP2A1-AS1 LAT ATP2A1 SPNS1 NFATC2IP MIR4721 SH2B1 CD19 RABEP2 TUFM MIR4517
nsv1059555 Chr.16:28373144 - 29195838 on Build GRCh38 Gain MIR6862-1 IL27 LOC107984832 CLN3 MIR4517 NPIPB9 NPIPB8 ATP2A1 NFATC2IP APOBR CD19 EIF3C NUPR1 ATXN2L LAT EIF3CL SPNS1 RRN3P2 MIR6862-2 MIR4721 SH2B1 RABEP2 SULT1A1 TUFM ATP2A1-AS1 SULT1A2 NPIP LOC101928215 SGF29
dgv2831n100 Chr.16:28812594 - 29032542 on Build GRCh38 Gain ATXN2L ATP2A1-AS1 LAT ATP2A1 SPNS1 NFATC2IP MIR4721 SH2B1 CD19 RABEP2 TUFM MIR4517
esv3570454 Chr.16:28799004 - 29032129 on Build GRCh38 Gain ATXN2L ATP2A1-AS1 LAT ATP2A1 SPNS1 NFATC2IP MIR4721 SH2B1 CD19 RABEP2 TUFM MIR4517
nsv571805 Chr.16:28824174 - 29032129 on Build GRCh38 Loss ATXN2L ATP2A1-AS1 LAT ATP2A1 SPNS1 NFATC2IP MIR4721 SH2B1 CD19 RABEP2 TUFM MIR4517
dgv2830n100 Chr.16:28620264 - 29032542 on Build GRCh38 Gain ATXN2L LAT SPNS1 MIR6862-2 MIR4721 SH2B1 RABEP2 SULT1A1 TUFM MIR4517 NPIPB9 ATP2A1-AS1 NPIPB8 ATP2A1 NFATC2IP CD19 EIF3C

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