Hs01112952_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140856843 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56139
• Gene Name: protocadherin alpha 10
• Gene Aliases: CNR8, CNRN8, CNRS8, CRNR8, PCDH-ALPHA10
• Location: Chr.5:140855883-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA10	NM_018901.3	1	961	NP_061724.1
	NM_031859.2	1	961	NP_114065.1
	NM_031860.2	1	961	NP_114066.1
	AF152306.1	1	795	AAD43700.1
	AF152475.1	1	795	AAD43736.1
	AF169689.1	1	795	AAF89329.1
	BC130447.1	1	834

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_031857.1			NP_114063.1
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
nsv442962	Chr.5:140844251 - 140864171 on Build GRCh38	Loss	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
dgv971n67	Chr.5:140842564 - 140859431 on Build GRCh38	Loss	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
dgv10102n54	Chr.5:140851652 - 140857963 on Build GRCh38	Loss	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
dgv10105n54	Chr.5:140853365 - 140857963 on Build GRCh38	Loss	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
nsv599903	Chr.5:140855278 - 140857963 on Build GRCh38	Loss	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB18P PCDHGA4 PCDHGA6 PCDHGA10 PCDHB14 PCDHB15 TAF7 PCDHA13 PCDHB1 PCDHB7 PCDHGB3 PCDHGB2 PCDHB9 PCDHA1 PCDHB10 PCDHB4 PCDHB17P PCDHA6 PCDHGA7 PCDHGA12 PCDHGA5 PCDHGA2 PCDHGA8 PCDHGB7 PCDHA12 PCDHA7 PCDHB12 PCDHGB8P PCDHGA9 PCDHB6 PCDHA8 SLC25A2 PCDHA2 PCDHA9 PCDHGB6 PCDHAC1 PCDHA10 PCDHB11 PCDHB3 PCDHB19P PCDHGA3 PCDHGA11 PCDHGB1 PCDHB13 LOC101926905 PCDHB16 PCDHA3 PCDHGA1 PCDHB2 PCDHA4 PCDHGB4 PCDHAC2 PCDHGB5 PCDHA5 PCDHB8 PCDHB5 PCDHA11
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA9 PCDHA6 PCDHA3 VTRNA1-3 PCDHA4 PCDHA10 PCDHA5 PCDHA7 ZMAT2 HARS2 HARS VTRNA1-2 PCDHA8 PCDHA1 VTRNA1-1 PCDHA11 PCDHA2
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA11 PCDHA2
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA11 PCDHA2
dgv10094n54	Chr.5:140846323 - 140860465 on Build GRCh38	Loss	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
dgv10099n54	Chr.5:140850785 - 140859109 on Build GRCh38	Loss	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
nsv599894	Chr.5:140852761 - 140864165 on Build GRCh38	Loss	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2
nsv964954	Chr.5:140856140 - 140858351 on Build GRCh38	Duplication	PCDHA9 PCDHA6 PCDHA5 PCDHA3 PCDHA7 PCDHA4 PCDHA10 PCDHA8 PCDHA1 PCDHA2

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding