Genomic Map
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Target Gene Details
Entrez Gene ID: | 100126793 |
Gene Name: | ghrelin opposite strand/antisense RNA |
Gene Aliases: |
GHRL-AS1, GHRLAS, NCRNA00068 |
Location: |
Chr.3:10280952-10293449 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| GHRLOS | NR_004431.3 | |||
| NR_024144.2 | ||||
| NR_024145.2 | ||||
| NR_073566.1 | ||||
| NR_073567.1 | ||||
| NR_073568.1 | ||||
| EU789528.1 | ||||
| EU789529.1 | ||||
| EU789530.1 | ||||
| EU789534.1 | ||||
| EU789535.1 | ||||
| EU789536.1 | ||||
| EU789537.1 | ||||
| EU789538.1 | ||||
| EU789539.1 | ||||
| EU789540.1 | ||||
| EU789541.1 | ||||
| EU789542.1 | ||||
| EU789543.1 | ||||
| EU789544.1 | ||||
| EU789545.1 | ||||
| EU789546.1 | ||||
| EU789547.1 | ||||
| EU789548.1 | ||||
| EU789549.1 | ||||
| EU789550.1 | ||||
| EU789551.1 | ||||
| EU789552.1 |
Target Gene Details
Entrez Gene ID: | 84657 |
Gene Name: | long intergenic non-protein coding RNA 852 |
Gene Aliases: |
C3orf42, GHRL-AS2, GHRLOS2, NAG73 |
Location: |
Chr.3:10284419-10285746 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LINC00852 | NR_026829.1 | 1 | 228 | |
| AF280797.2 | 1 | 228 | AAK15459.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv436362 | Chr.3:10048344 - 11860564 on Build GRCh38 | Deletion |
 SLC6A1-AS1
FANCD2OS
MIR378B
ATP2B2
TAMM41
VGLL4
LINC00606
ATG7
BRK1
TATDN2
SEC13
VHL
ATP2B2-IT2
FANCD2
GHRL
HRH1
SLC6A11
LINC00852
IRAK2
GHRLOS
LOC101927467
SLC6A1
MIR885
|
| nsv508903 | Chr.3:10275353 - 10401894 on Build GRCh38 | Insertion |
SEC13
MIR378B
ATP2B2
GHRL
TATDN2
LINC00852
GHRLOS
MIR885
|
| dgv762e201 | Chr.3:10008967 - 11913136 on Build GRCh38 | Deletion |
SLC6A1-AS1
EMC3
MIR378B
VGLL4
CIDECP
LINC00606
BRK1
SEC13
ATP2B2-IT2
FANCD2
GHRL
LOC401052
LINC00852
SLC6A1
FANCD2OS
ATP2B2
TAMM41
ATG7
TATDN2
FANCD2P2
VHL
HRH1
SLC6A11
IRAK2
GHRLOS
LOC101927467
MIR885
|
| nsv460420 | Chr.3:10260488 - 10294102 on Build GRCh38 | Loss |
GHRL
TATDN2
LINC00852
GHRLOS
|
| nsv1121603 | Chr.3:10071433 - 11889279 on Build GRCh38 | Deletion |
SLC6A1-AS1
FANCD2OS
MIR378B
ATP2B2
TAMM41
VGLL4
LINC00606
ATG7
BRK1
TATDN2
FANCD2P2
SEC13
VHL
ATP2B2-IT2
FANCD2
GHRL
HRH1
SLC6A11
LINC00852
IRAK2
GHRLOS
LOC101927467
SLC6A1
MIR885
|
| nsv436869 | Chr.3:10064456 - 11877985 on Build GRCh38 | Insertion |
SLC6A1-AS1
FANCD2OS
MIR378B
ATP2B2
TAMM41
VGLL4
LINC00606
ATG7
BRK1
TATDN2
FANCD2P2
SEC13
VHL
ATP2B2-IT2
FANCD2
GHRL
HRH1
SLC6A11
LINC00852
IRAK2
GHRLOS
LOC101927467
SLC6A1
MIR885
|
| nsv1073204 | Chr.3:9996548 - 11875005 on Build GRCh38 | Deletion |
SLC6A1-AS1
EMC3
MIR378B
VGLL4
CIDECP
LINC00606
BRK1
SEC13
ATP2B2-IT2
FANCD2
GHRL
LOC401052
LINC00852
SLC6A1
EMC3-AS1
FANCD2OS
ATP2B2
TAMM41
ATG7
TATDN2
FANCD2P2
VHL
HRH1
SLC6A11
IRAK2
GHRLOS
LOC101927467
MIR885
|
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Additional Information:
For this assay, SNP(s) [rs189820694] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Exonic
Intronic
Non-exonic
DGV Variation
|
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