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See other LOC101927401 CNV Assays ›
Gene Symbol
LOC101927401
Assay Reference Genome
Location

Chr.1:228360978 on build GRCh38
Cytoband
1q42.13
Assay ID Hs01117225_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 101927401

Gene Name:

 MAGE-like protein 2

Gene Aliases:

 -

Location:

 Chr.1:228360893-228369935 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 8 - Exon 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC101927401 XM_011544350.2 XP_011542652.1
XM_011544351.2 XP_011542653.1
XM_011544352.2 XP_011542654.1
XM_017003091.1 XP_016858580.1
XM_017003092.1 XP_016858581.1

Target Gene Details

Entrez Gene ID:

 84033

Gene Name:

 obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF

Gene Aliases:

 ARHGEF30, UNC89

Location:

 Chr.1:228208013-228381431 on Build GRCh38

Assay Gene Location:

 Within Exon 94
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
OBSCN NM_001098623.2 NP_001092093.2
NM_001271223.2 NP_001258152.2
NM_052843.3 81 20160 NP_443075.3
XM_005273287.4 XP_005273344.1
XM_005273291.4 XP_005273348.1
XM_005273298.4 XP_005273355.1
XM_005273307.4 XP_005273364.1
XM_006711822.3 XP_006711885.1
XM_006711823.3 XP_006711886.1
XM_006711827.3 85 21250 XP_006711890.1
XM_006711829.3 84 20974 XP_006711892.1
XM_011544297.2 XP_011542599.1
XM_011544299.2 XP_011542601.1
XM_017002443.1 XP_016857932.1
XM_017002444.1 XP_016857933.1
XM_017002445.1 XP_016857934.1
XM_017002446.1 XP_016857935.1
XM_017002447.1 XP_016857936.1
XM_017002448.1 XP_016857937.1
XM_017002449.1 XP_016857938.1
XM_017002450.1 XP_016857939.1
XM_017002451.1 XP_016857940.1
XM_017002452.1 XP_016857941.1
XM_017002453.1 XP_016857942.1
XM_017002454.1 XP_016857943.1
XM_017002455.1 XP_016857944.1
XM_017002456.1 XP_016857945.1
XM_017002457.1 XP_016857946.1
XM_017002458.1 XP_016857947.1
XM_017002459.1 XP_016857948.1
XM_017002460.1 XP_016857949.1
XM_017002461.1 XP_016857950.1
XM_017002462.1 XP_016857951.1
XM_017002463.1 XP_016857952.1
XM_017002464.1 XP_016857953.1
XM_017002465.1 XP_016857954.1
XM_017002466.1 XP_016857955.1
XM_017002467.1 XP_016857956.1
XM_017002468.1 XP_016857957.1
XM_017002469.1 XP_016857958.1
XM_017002470.1 XP_016857959.1
XM_017002471.1 93 23458 XP_016857960.1
XM_017002472.1 93 23455 XP_016857961.1
XM_017002473.1 XP_016857962.1
AB046776.1 BAB13382.1
AB046859.2 BAB13465.2
AJ002535.1 82 20157 CAC44768.1
AL832357.1 26 4576
AL833724.1 3 1605 CAH56259.1
AM231061.1 CAJ76912.1
DQ400343.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv826908 Chr.1:227707685 - 228503399 on Build GRCh38 Gain HIST3H2BB PRSS38 LOC107985355 MIR3620 WNT9A RNF187 C1orf35 MIR4666A IBA57 MIR5008 MRPL55 HIST3H3 TRIM11 LOC105373289 GUK1 IBA57-AS1 MIR6742 SNAP47 ARF1 HIST3H2A LOC100506571 OBSCN C1orf145 LOC101060022 LOC101927401 WNT3A GJC2 TRIM17 JMJD4
esv32853 Chr.1:227692415 - 228670462 on Build GRCh38 Gain RNA5S16 RNA5S11 RNA5S12 RNA5S8 LOC105373132 LOC107985355 MIR3620 RNF187 C1orf35 MIR4666A IBA57 RNA5S2 BTNL10 MRPL55 RNA5S1 RNA5S17 RNA5S15 MIR6742 SNAP47 ARF1 C1orf145 LOC101060022 RNA5S4 GJC2 TRIM17 JMJD4 DUSP5P1 HIST3H2BB RNA5S7 PRSS38 RHOU RNA5S13 WNT9A MIR5008 HIST3H3 TRIM11 LOC105373289 RNA5S3 GUK1 IBA57-AS1 RNA5S5 RNA5S9 HIST3H2A LOC100506571 RNA5S14 OBSCN LOC101927401 RNA5S6 WNT3A RNA5S10
nsv517545 Chr.1:228268446 - 228498298 on Build GRCh38 Loss HIST3H2A HIST3H3 TRIM11 OBSCN LOC101927401 HIST3H2BB TRIM17 RNF187 MIR4666A MIR6742
nsv1013500 Chr.1:228271433 - 228713854 on Build GRCh38 Gain RNA5S16 DUSP5P1 RNA5S11 RNA5S12 RNA5S8 HIST3H2BB RNA5S7 LOC105373132 RHOU RNA5S13 RNF187 MIR4666A RNA5S2 BTNL10 HIST3H3 TRIM11 RNA5S1 RNA5S17 RNA5S3 RNA5S15 RNA5S5 MIR6742 RNA5S9 HIST3H2A RNA5S14 OBSCN LOC101927401 RNA5S6 RNA5S4 RNA5S10 TRIM17
nsv827019 Chr.1:228126466 - 228463319 on Build GRCh38 Loss HIST3H3 TRIM11 HIST3H2BB GUK1 IBA57-AS1 MIR6742 HIST3H2A OBSCN C1orf145 LOC101927401 GJC2 TRIM17 MIR4666A IBA57
nsv523935 Chr.1:227850423 - 228494048 on Build GRCh38 Loss HIST3H2BB LOC107985355 MIR3620 WNT9A RNF187 C1orf35 MIR4666A IBA57 MIR5008 MRPL55 HIST3H3 TRIM11 GUK1 IBA57-AS1 MIR6742 ARF1 HIST3H2A LOC100506571 OBSCN C1orf145 LOC101060022 LOC101927401 WNT3A GJC2 TRIM17
dgv840n54 Chr.1:228276547 - 228369087 on Build GRCh38 Loss OBSCN LOC101927401
nsv508697 Chr.1:228352336 - 228434913 on Build GRCh38 Deletion HIST3H3 TRIM11 OBSCN LOC101927401 TRIM17 MIR6742
nsv952140 Chr.1:228331100 - 228380999 on Build GRCh38 Deletion OBSCN LOC101927401

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