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See other LOC101927401 CNV Assays ›
Gene Symbol
LOC101927401
Assay Reference Genome
Location

Chr.1:228360978 on build GRCh38
Cytoband
1q42.13
Assay ID Hs01117225_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 101927401

Gene Name:

 MAGE-like protein 2

Gene Aliases:

 -

Location:

 Chr.1:228360893-228369935 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 8 - Exon 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC101927401 XM_011544350.2 XP_011542652.1
XM_011544351.2 XP_011542653.1
XM_011544352.2 XP_011542654.1
XM_017003091.1 XP_016858580.1
XM_017003092.1 XP_016858581.1

Target Gene Details

Entrez Gene ID:

 84033

Gene Name:

 obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF

Gene Aliases:

 ARHGEF30, UNC89

Location:

 Chr.1:228208013-228381431 on Build GRCh38

Assay Gene Location:

 Within Exon 94
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
OBSCN NM_001098623.2 NP_001092093.2
NM_001271223.2 NP_001258152.2
NM_052843.3 81 20160 NP_443075.3
XM_005273287.4 XP_005273344.1
XM_005273291.4 XP_005273348.1
XM_005273298.4 XP_005273355.1
XM_005273307.4 XP_005273364.1
XM_006711822.3 XP_006711885.1
XM_006711823.3 XP_006711886.1
XM_006711827.3 85 21250 XP_006711890.1
XM_006711829.3 84 20974 XP_006711892.1
XM_011544297.2 XP_011542599.1
XM_011544299.2 XP_011542601.1
XM_017002443.1 XP_016857932.1
XM_017002444.1 XP_016857933.1
XM_017002445.1 XP_016857934.1
XM_017002446.1 XP_016857935.1
XM_017002447.1 XP_016857936.1
XM_017002448.1 XP_016857937.1
XM_017002449.1 XP_016857938.1
XM_017002450.1 XP_016857939.1
XM_017002451.1 XP_016857940.1
XM_017002452.1 XP_016857941.1
XM_017002453.1 XP_016857942.1
XM_017002454.1 XP_016857943.1
XM_017002455.1 XP_016857944.1
XM_017002456.1 XP_016857945.1
XM_017002457.1 XP_016857946.1
XM_017002458.1 XP_016857947.1
XM_017002459.1 XP_016857948.1
XM_017002460.1 XP_016857949.1
XM_017002461.1 XP_016857950.1
XM_017002462.1 XP_016857951.1
XM_017002463.1 XP_016857952.1
XM_017002464.1 XP_016857953.1
XM_017002465.1 XP_016857954.1
XM_017002466.1 XP_016857955.1
XM_017002467.1 XP_016857956.1
XM_017002468.1 XP_016857957.1
XM_017002469.1 XP_016857958.1
XM_017002470.1 XP_016857959.1
XM_017002471.1 93 23458 XP_016857960.1
XM_017002472.1 93 23455 XP_016857961.1
XM_017002473.1 XP_016857962.1
AB046776.1 BAB13382.1
AB046859.2 BAB13465.2
AJ002535.1 82 20157 CAC44768.1
AL832357.1 26 4576
AL833724.1 3 1605 CAH56259.1
AM231061.1 CAJ76912.1
DQ400343.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv826908 Chr.1:227707685 - 228503399 on Build GRCh38 Gain WNT9A C1orf145 LOC101927401 JMJD4 TRIM17 MIR4666A IBA57 MRPL55 GUK1 LOC105373289 GJC2 ARF1 HIST3H2A MIR3620 MIR6742 IBA57-AS1 MIR5008 RNF187 TRIM11 C1orf35 SNAP47 PRSS38 LOC100506571 HIST3H2BB HIST3H3 LOC101060022 WNT3A OBSCN LOC107985355
nsv1013500 Chr.1:228271433 - 228713854 on Build GRCh38 Gain RNA5S9 RNA5S8 LOC101927401 TRIM17 MIR4666A RNA5S15 RNA5S13 RNA5S16 RNA5S7 RNA5S10 RNA5S1 HIST3H2A RNA5S3 LOC105373132 RNA5S11 DUSP5P1 MIR6742 RHOU RNA5S4 RNF187 TRIM11 RNA5S14 BTNL10 RNA5S12 RNA5S6 RNA5S5 HIST3H2BB HIST3H3 RNA5S17 RNA5S2 OBSCN
nsv517545 Chr.1:228268446 - 228498298 on Build GRCh38 Loss MIR6742 LOC101927401 RNF187 HIST3H2A TRIM11 HIST3H2BB TRIM17 MIR4666A HIST3H3 OBSCN
esv32853 Chr.1:227692415 - 228670462 on Build GRCh38 Gain WNT9A C1orf145 LOC101927401 JMJD4 RNA5S15 MRPL55 RNA5S13 RNA5S16 GUK1 LOC105373289 RNA5S1 MIR3620 RNA5S3 RNA5S11 MIR5008 TRIM11 C1orf35 PRSS38 LOC100506571 BTNL10 RNA5S2 WNT3A OBSCN RNA5S9 RNA5S8 TRIM17 MIR4666A IBA57 GJC2 ARF1 RNA5S7 RNA5S10 HIST3H2A LOC105373132 DUSP5P1 MIR6742 IBA57-AS1 RHOU RNA5S4 RNF187 SNAP47 RNA5S14 RNA5S12 RNA5S6 RNA5S5 HIST3H2BB HIST3H3 RNA5S17 LOC101060022 LOC107985355
nsv827019 Chr.1:228126466 - 228463319 on Build GRCh38 Loss MIR6742 IBA57-AS1 C1orf145 LOC101927401 TRIM11 TRIM17 MIR4666A IBA57 GUK1 GJC2 HIST3H2A HIST3H2BB HIST3H3 OBSCN
nsv549295 Chr.1:228276547 - 228413937 on Build GRCh38 Loss MIR6742 LOC101927401 TRIM11 TRIM17 OBSCN
nsv523935 Chr.1:227850423 - 228494048 on Build GRCh38 Loss WNT9A C1orf145 LOC101927401 TRIM17 MIR4666A IBA57 MRPL55 GUK1 GJC2 ARF1 HIST3H2A MIR3620 MIR6742 IBA57-AS1 MIR5008 RNF187 TRIM11 C1orf35 LOC100506571 HIST3H2BB HIST3H3 LOC101060022 WNT3A OBSCN LOC107985355
nsv508697 Chr.1:228352336 - 228434913 on Build GRCh38 Deletion MIR6742 LOC101927401 TRIM11 TRIM17 HIST3H3 OBSCN
nsv952140 Chr.1:228331100 - 228380999 on Build GRCh38 Deletion LOC101927401 OBSCN

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