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See other CPSF3L CNV Assays ›
Gene Symbol
CPSF3L
Assay Reference Genome
Location

Chr.1:1313521 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01126099_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 54973

Gene Name:

 cleavage and polyadenylation specific factor 3-like

Gene Aliases:

 CPSF73L, INT11, INTS11, RC-68, RC68

Location:

 Chr.1:1311585-1324687 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 12 - Exon 12
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CPSF3L NM_001256456.1 NP_001243385.1
NM_001256460.1 NP_001243389.1
NM_001256462.1 NP_001243391.1
NM_001256463.1 NP_001243392.1
NM_017871.5 NP_060341.2
XM_011541647.1 XP_011539949.1
XM_011541648.1 XP_011539950.1
XM_011541650.1 XP_011539952.1
XM_017001557.1 XP_016857046.1
XM_017001558.1 XP_016857047.1
AK000549.1 BAA91246.1
AK021939.1 BAB13943.1
AK023356.1 BAB14541.1
AK056652.1
AK058018.1
AK092190.1
AK123641.1 2 1511
AK291387.1
AK297350.1
AL136813.1 CAB66747.1
BC000675.2 AAH00675.2
BC007978.2 AAH07978.1
BC008041.2 AAH08041.1
BC013904.2 AAH13904.2
BC020199.1 AAH20199.1
CR533557.1 CAG38588.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss C1orf159 SAMD11 LOC729737 MIR6859-2 FNDC10 SLC35E2 NOC2L LOC101928626 LOC100133331 SKI FAM138A ACAP3 CCNL2 LOC105378949 MTND2P28 MIR6727 LOC105378589 ATAD3C LOC100287934 ISG15 OR4F16 LINC01128 ATAD3B LINC00115 DDX11L1 KLHL17 LOC105378947 B3GALT6 LOC107984841 PERM1 FAM132A TAS1R3 LOC105378948 NADK PRKCZ MIR200B UBE2J2 MXRA8 LOC102724312 MORN1 CFAP74 AURKAIP1 DVL1 SLC35E2B SDF4 MIR200A HES4 LOC100129534 MIR6808 LOC105378591 PUSL1 MRPL20 GNB1 LINC01342 TNFRSF4 CPSF3L LOC107985728 WASH7P MIR6723 MIR429 OR4F5 AGRN MIR1302-2 VWA1 MTND1P23 TMEM88B CPTP MIR6726 LOC100288069 CALML6 CDK11B RNF223 PLEKHN1 LOC148413 TTLL10 CDK11A FAM87B TMEM240 TMEM52 SCNN1D OR4F29 LOC105378592 LOC100132287 FAAP20 LOC107985729 FAM41C LOC100506504 ATAD3A LOC100288175 MIB2 TTLL10-AS1 SSU72 LOC100130417 MIR6859-1 LOC102725121 LOC100134822 ANKRD65 LOC284600 MMP23B GABRD MMP23A TNFRSF18
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss MIR6808 CPSF3L ACAP3 DVL1 CPTP PUSL1 MIR6727 TAS1R3 MIR6726
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss MIR6808 AURKAIP1 MXRA8 SCNN1D CPSF3L ACAP3 DVL1 CPTP PUSL1 MIR6727 TAS1R3 MIR6726
dgv7n100 Chr.1:1306835 - 1379057 on Build GRCh38 Loss MIR6808 AURKAIP1 MXRA8 CPSF3L ACAP3 DVL1 CPTP PUSL1 MIR6727 TAS1R3
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss MIR6808 C1orf159 PUSL1 RNF223 B3GALT6 TTLL10 LINC01342 SCNN1D TNFRSF4 CPSF3L ACAP3 FAM132A TAS1R3 MIR429 MIR200B UBE2J2 TTLL10-AS1 MXRA8 MIR6727 AURKAIP1 DVL1 CPTP TNFRSF18 SDF4 MIR200A MIR6726
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss MIR6808 MXRA8 CPSF3L ACAP3 DVL1 CPTP PUSL1 MIR6727 TAS1R3
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication C1orf159 PUSL1 RNF223 B3GALT6 TTLL10 LINC01342 SCNN1D TNFRSF4 CPSF3L ACAP3 FAM132A TAS1R3 MIR429 AGRN LOC105378948 LOC100288175 MIR200B UBE2J2 TTLL10-AS1 MIR6727 CPTP TNFRSF18 SDF4 MIR200A MIR6726
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion MIR6808 AURKAIP1 MXRA8 SCNN1D CPSF3L ACAP3 DVL1 CPTP PUSL1 MIR6727 TAS1R3 MIR6726
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MIR6808 C1orf159 SAMD11 FNDC10 PUSL1 SLC35E2 NOC2L MRPL20 LINC01342 TNFRSF4 CPSF3L ACAP3 LOC107985728 MIR429 AGRN CCNL2 MIR6727 VWA1 ATAD3C LOC100287934 ISG15 TMEM88B CPTP LINC01128 ATAD3B LINC00115 MIR6726 LOC100288069 KLHL17 CDK11B RNF223 B3GALT6 PLEKHN1 LOC148413 TTLL10 CDK11A FAM87B TMEM240 PERM1 SCNN1D FAM132A TAS1R3 LOC107985729 LOC105378948 FAM41C NADK ATAD3A LOC100288175 MIB2 MIR200B UBE2J2 TTLL10-AS1 MXRA8 SSU72 LOC102724312 LOC100130417 AURKAIP1 ANKRD65 LOC284600 MMP23B DVL1 MMP23A TNFRSF18 SLC35E2B SDF4 MIR200A HES4
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss MIR6808 MXRA8 CPSF3L ACAP3 DVL1 CPTP PUSL1 MIR6727 TAS1R3
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MIR6808 C1orf159 FNDC10 PUSL1 CDK11B MRPL20 B3GALT6 LOC148413 TTLL10 LINC01342 TMEM240 SCNN1D TNFRSF4 CPSF3L ACAP3 FAM132A TAS1R3 MIR429 LOC107985729 CCNL2 ATAD3A MIB2 MIR200B UBE2J2 TTLL10-AS1 MXRA8 SSU72 LOC102724312 MIR6727 VWA1 ATAD3C TMEM88B AURKAIP1 ANKRD65 MMP23B DVL1 CPTP TNFRSF18 SDF4 MIR200A ATAD3B MIR6726
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain MIR6808 MXRA8 SCNN1D CPSF3L ACAP3 DVL1 CPTP PUSL1 MIR6727 TAS1R3 MIR6726
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss MIR6808 UBE2J2 MXRA8 PUSL1 MIR6727 AURKAIP1 SCNN1D CPSF3L ACAP3 DVL1 CPTP TAS1R3 MIR6726
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MIR6808 C1orf159 KLHL17 SAMD11 PUSL1 NOC2L MRPL20 RNF223 B3GALT6 PLEKHN1 LOC148413 TTLL10 LINC01342 PERM1 SCNN1D TNFRSF4 CPSF3L ACAP3 LOC107985728 FAM132A TAS1R3 MIR429 AGRN LOC105378948 CCNL2 LOC100288175 MIR200B UBE2J2 TTLL10-AS1 MXRA8 MIR6727 LOC100130417 ISG15 TMEM88B AURKAIP1 ANKRD65 LOC284600 DVL1 CPTP TNFRSF18 SDF4 MIR200A HES4 MIR6726
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR200B UBE2J2 TTLL10-AS1 PUSL1 MIR6727 B3GALT6 TTLL10 SCNN1D TNFRSF4 CPSF3L ACAP3 TNFRSF18 FAM132A SDF4 MIR200A MIR429 MIR6726

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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