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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89738581 on build GRCh38
Cytoband
16q24.3
Assay ID Hs01137686_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Exon 44
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 43 4430 NP_000126.2
NM_001286167.1 43 4434 NP_001273096.1
XM_005256294.4 42 4608 XP_005256351.1
XM_011522945.2 41 4479 XP_011521247.1
XM_011522946.2 42 4615 XP_011521248.1
XM_011522947.2 36 4526 XP_011521249.1
XM_017023044.1 42 4302 XP_016878533.1
AK299282.1 43 4423
X99226.1 43 4419 CAA67610.1

Target Gene Details

Entrez Gene ID:

 92822

Gene Name:

 zinc finger protein 276

Gene Aliases:

 CENP-Z, CENPZ, ZADT, ZFP276, ZNF477

Location:

 Chr.16:89720368-89740925 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZNF276 NM_001113525.1 11 2277 NP_001106997.1
NM_152287.3 11 2267 NP_689500.2
NR_110122.1 11 2352
NR_110126.1 11 2235
NR_110128.1 11 2158
NR_110129.1 11 2247
XM_005256324.3 XP_005256381.1
XM_005256328.3 XP_005256385.1
XM_017023890.1 10 2202 XP_016879379.1
AK026482.1
AK056405.1 11 2303
AK096004.1
AK096762.1
AK295770.1
BC032781.1 AAH32781.2
BC107603.1 11 2092 AAI07604.1
BC110348.1 AAI10349.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion ZNF276 VPS9D1-AS1 VPS9D1 FANCA
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss LOC105371419 TCF25 LOC107984817 ZNF276 SPIRE2 FANCA
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion SPATA2L ZNF276 VPS9D1-AS1 CDK10 VPS9D1 FANCA
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss AFG3L1P TCF25 LOC107984817 CHMP1A ZNF276 DPEP1 VPS9D1-AS1 GAS8-AS1 CDK10 DEF8 VPS9D1 SPIRE2 FANCA GAS8 LOC105371419 SPATA33 SPATA2L TUBB3 CENPBD1 MC1R DBNDD1
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain LOC105371419 SPATA33 LOC107984817 SPATA2L ZNF276 VPS9D1-AS1 CDK10 VPS9D1 SPIRE2 FANCA
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss ZNF778 LOC101927817 AFG3L1P TCF25 LOC107984817 CHMP1A ZNF276 DPEP1 VPS9D1-AS1 GAS8-AS1 LOC100287036 SPIRE2 ANKRD11 FAM157C TUBB3 CENPBD1 PRDM7 MC1R CPNE7 DBNDD1 SNORD68 CDK10 DEF8 VPS9D1 FANCA LOC105371414 GAS8 LOC105371419 SPG7 SPATA33 SPATA2L TUBB8P7 URAHP RPL13
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss LOC105371419 LOC107984817 ZNF276 SPIRE2 FANCA
dgv875e212 Chr.16:89737043 - 89738817 on Build GRCh38 Loss ZNF276 FANCA
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss SPATA2L ZNF276 VPS9D1-AS1 CDK10 VPS9D1 FANCA
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss IL17C CTU2 ZNF778 AFG3L1P LOC107984817 DPEP1 VPS9D1-AS1 LOC100287036 MIR4722 RNF166 LOC100129697 TUBB3 SNAI3-AS1 CENPBD1 ACSF3 PRDM7 MC1R APRT CPNE7 CDT1 LOC339059 SNORD68 CDK10 DEF8 VPS9D1 FANCA CYBA LINC00304 LOC105371414 LOC105371419 LOC400558 LOC101927793 RPL13 SLC22A31 MVD LOC101927817 SNAI3 TCF25 LOC105371409 CHMP1A ZNF276 GAS8-AS1 SPIRE2 ANKRD11 FAM157C LOC107987238 DBNDD1 CBFA2T3 GALNS LOC100289580 TRAPPC2L GAS8 SPG7 SPATA33 SPATA2L TUBB8P7 URAHP CDH15 PIEZO1 PABPN1L
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion CHMP1A ZNF276 DPEP1 SNORD68 VPS9D1-AS1 CDK10 VPS9D1 FANCA SPG7 SPATA33 SPATA2L RPL13 CPNE7

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