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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2598118 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01169940_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 12 1960 NP_001248745.1
NM_002613.4 14 2171 NP_002604.1
NM_031268.5 11 1790 NP_112558.2
XM_011522521.2 14 5859 XP_011520823.1
XM_011522523.2 11 5483 XP_011520825.1
XM_017023271.1 13 6239 XP_016878760.1
XM_017023272.1 13 2795 XP_016878761.1
XM_017023273.1 13 2504 XP_016878762.1
XM_017023274.1 14 2642 XP_016878763.1
XM_017023275.1 10 5864 XP_016878764.1
XM_017023276.1 10 2108 XP_016878765.1
XM_017023277.1 11 2206 XP_016878766.1
BC033494.1 11 1703 AAH33494.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication AXIN1 CCDC154 WDR90 NTN3 PGP POLR3K C16orf91 PKD1 CCDC78 SNORD60 TBC1D24 SNORA10 MEIOB NDUFB10 CRAMP1 LOC107984876 MRPL28 NUBP2 LOC729652 SSTR5 FBXL16 RPL23AP5 SPSB3 LOC652276 UNKL MRPS34 CLCN7 FAM173A RHBDL1 MSRB1 LOC105371038 NARFL RAB11FIP3 IFT140 HBQ1 TPSD1 LOC107987233 LINC00235 SOX8 GFER TMEM204 TMEM8A RPS2 HAGH WDR24 TBL3 SNORA64 ABCA17P WASIR2 TPSG1 HN1L GNPTG MSLN NME4 SNHG19 TRAF7 MIR3178 PRSS27 MIR1225 SYNGR3 TPSAB1 LOC101929280 MIR6511B1 CASKIN1 KCTD5 LOC105371046 HBM RPUSD1 EME2 RGS11 SNORA78 CAPN15 NOXO1 NPRL3 SNRNP25 MIR5587 ECI1 C1QTNF8 HBZ FAHD1 JMJD8 LOC105371045 PRR25 HBA1 ABCA3 MIR4717 PTX4 SSTR5-AS1 METTL26 HAGHL HS3ST6 MLST8 RNPS1 LOC105371047 METRN PRSS29P HBA2 RHBDF1 ERVK13-1 MAPK8IP3 STUB1 PIGQ CEMP1 LINC00254 MIR3677 RPL3L LOC105371184 LOC100134368 RHOT2 ATP6V0C MIR662 TPSB2 CACNA1H ZNF598 DDX11L10 TELO2 RNF151 WFIKKN1 LOC105371049 TSC2 MIR6767 NTHL1 NHLRC4 BAIAP3 NPW PRR35 GNG13 MIR3180-5 C16orf59 PDPK1 FAM234A RAB26 AMDHD2 E4F1 FLJ42627 RAB40C CHTF18 DECR2 MIR6859-4 ARHGDIG BRICD5 PDIA2 NME3 MIR6768 SLC9A3R2 MCRIP2 SNHG9 DNASE1L2 MIR3176 TSR3 MPG IGFALS MIR940 CCNF UBE2I MIR3177 LOC106660606 LMF1-AS1 MIR4516 LUC7L LOC100287175 LMF1
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss MIR3178 PRSS33 PRSS27 PRSS41 CEMP1 SRRM2-AS1 TBC1D24 ATP6V0C KCTD5 PDPK1 PRSS21 AMDHD2 TCEB2 SRRM2 FLJ42627 LOC652276 ERVK13-1
dgv2693n100 Chr.16:2593295 - 2676863 on Build GRCh38 Gain FLJ42627 LOC652276 ERVK13-1 PDPK1
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain LOC652276 PDPK1
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss MIR3178 AMDHD2 CEMP1 FLJ42627 LOC652276 TBC1D24 ATP6V0C ERVK13-1 PDPK1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain ABCA3 ABCA17P NTN3 MIR4717 PGP TSC2 MIR6767 PKD1 SNORD60 MLST8 RNPS1 MIR3180-5 TBC1D24 C16orf59 PDPK1 RAB26 AMDHD2 E4F1 LOC729652 LOC652276 SNHG19 BRICD5 TRAF7 MIR3178 MIR6768 MIR1225 CEMP1 MIR3677 DNASE1L2 ATP6V0C MIR6511B1 MIR940 CASKIN1 CCNF LOC106660606 MIR4516 ECI1 LOC105371049
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss PRSS27 SRRM2 FLJ42627 SRRM2-AS1 LOC652276 KCTD5 ERVK13-1 PDPK1
dgv780e212 Chr.16:2595646 - 2700191 on Build GRCh38 Gain FLJ42627 LOC652276 KCTD5 ERVK13-1 PDPK1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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