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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2598118 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01169940_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 12 1960 NP_001248745.1
NM_002613.4 14 2171 NP_002604.1
NM_031268.5 11 1790 NP_112558.2
XM_011522521.2 14 5859 XP_011520823.1
XM_011522523.2 11 5483 XP_011520825.1
XM_017023271.1 13 6239 XP_016878760.1
XM_017023272.1 13 2795 XP_016878761.1
XM_017023273.1 13 2504 XP_016878762.1
XM_017023274.1 14 2642 XP_016878763.1
XM_017023275.1 10 5864 XP_016878764.1
XM_017023276.1 10 2108 XP_016878765.1
XM_017023277.1 11 2206 XP_016878766.1
BC033494.1 11 1703 AAH33494.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MSLN RNF151 NTN3 DDX11L10 RGS11 TPSD1 GNPTG CLCN7 LUC7L RAB26 TMEM204 KCTD5 TBL3 HAGH TRAF7 NDUFB10 CACNA1H BAIAP3 MEIOB NOXO1 LOC100287175 C1QTNF8 TSR3 FAHD1 IGFALS MIR5587 PKD1 TPSG1 SNORA78 TSC2 RPUSD1 RHBDL1 PGP PDPK1 EME2 AMDHD2 LOC101929280 MSRB1 LOC105371047 METRN TPSAB1 NUBP2 POLR3K SPSB3 MIR4516 LINC00235 TPSB2 SNRNP25 PRSS27 SSTR5 MLST8 ZNF598 LOC105371184 HBQ1 HBZ MCRIP2 NME4 DECR2 FLJ42627 NPW CCDC154 MRPL28 LOC107987233 UNKL MIR6768 RHBDF1 METTL26 PRR35 LOC105371049 ABCA3 TMEM8A TELO2 CCDC78 PRR25 DNASE1L2 HBA2 AXIN1 BRICD5 LOC105371046 LOC729652 LOC105371038 CASKIN1 FBXL16 RPL23AP5 WDR24 PRSS29P MIR3177 MPG C16orf59 CRAMP1 LOC106660606 WFIKKN1 SNHG9 LMF1-AS1 MIR3178 MRPS34 WASIR2 HBA1 SSTR5-AS1 HBM MIR6511B1 MAPK8IP3 NARFL SLC9A3R2 HS3ST6 RAB40C NPRL3 SNORA64 SNORA10 MIR940 NTHL1 MIR6859-4 HN1L ERVK13-1 CCNF JMJD8 RPL3L RPS2 MIR3180-5 LMF1 LOC105371045 RAB11FIP3 TBC1D24 CEMP1 LINC00254 E4F1 ECI1 MIR1225 ARHGDIG CAPN15 MIR3677 SNHG19 SNORD60 LOC107984876 MIR6767 UBE2I SYNGR3 PDIA2 ATP6V0C FAM234A GNG13 WDR90 NME3 ABCA17P LOC652276 MIR4717 GFER MIR3176 PTX4 CHTF18 IFT140 PIGQ C16orf91 FAM173A STUB1 SOX8 LOC100134368 MIR662 NHLRC4 RHOT2 RNPS1 HAGHL
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss MIR3178 TBC1D24 PRSS27 LOC652276 CEMP1 PDPK1 TCEB2 PRSS41 AMDHD2 KCTD5 SRRM2-AS1 PRSS21 FLJ42627 ERVK13-1 ATP6V0C PRSS33 SRRM2
dgv2693n100 Chr.16:2593295 - 2676863 on Build GRCh38 Gain FLJ42627 LOC652276 ERVK13-1 PDPK1
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain LOC652276 PDPK1
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss MIR3178 TBC1D24 FLJ42627 LOC652276 CEMP1 ERVK13-1 PDPK1 ATP6V0C AMDHD2
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain BRICD5 NTN3 LOC729652 MIR3180-5 CASKIN1 TBC1D24 CEMP1 MLST8 E4F1 RAB26 ECI1 MIR1225 C16orf59 TRAF7 MIR3677 SNHG19 SNORD60 MIR6767 LOC106660606 ATP6V0C PKD1 MIR3178 ABCA17P TSC2 LOC652276 MIR4717 PGP MIR6511B1 PDPK1 AMDHD2 MIR6768 LOC105371049 ABCA3 MIR940 DNASE1L2 CCNF MIR4516 RNPS1
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss KCTD5 SRRM2-AS1 PRSS27 FLJ42627 LOC652276 ERVK13-1 PDPK1 SRRM2
dgv780e212 Chr.16:2595646 - 2700191 on Build GRCh38 Gain KCTD5 FLJ42627 LOC652276 ERVK13-1 PDPK1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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