Hs01174692_cn

• Gene Symbol: KRT23
• Assay Reference Genome Location: Chr.17:40928366 on build GRCh38
• Cytoband: 17q21.2

Target Gene Details

• Entrez Gene ID: 25984
• Gene Name: keratin 23
• Gene Aliases: CK23, HAIK1, K23
• Location: Chr.17:40922696-40937643 on Build GRCh38
• Assay Gene Location: Overlaps Intron 5 - Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
KRT23	NM_001282433.1			NP_001269362.1
	NM_015515.4			NP_056330.3
	XM_005257200.4			XP_005257257.1
	XM_011524595.1			XP_011522897.1
	AF102848.1			AAK00050.1
	AK002047.1			BAA92054.1
	AK225866.1
	AK289449.1
	AK302109.1
	AK310880.1
	AK314604.1
	AL117538.1			CAB55984.2
	BC028356.2			AAH28356.1
	CV373638.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3640559	Chr.17:40897964 - 41118942 on Build GRCh38	Gain	KRTAP2-1 KRTAP3-3 KRTAP4-7 KRT23 KRTAP4-9 KRTAP1-1 KRTAP2-2 KRTAP4-11 KRTAP1-3 KRTAP3-1 KRTAP2-3 KRTAP3-2 KRTAP1-4 KRTAP1-5 KRT39 KRTAP4-8 KRTAP2-4 KRT40
nsv9550	Chr.17:40888389 - 41135577 on Build GRCh38	Loss	KRTAP2-1 KRTAP3-3 KRTAP4-7 KRT23 KRTAP4-9 KRTAP1-1 KRTAP2-2 KRTAP4-11 KRTAP1-3 KRTAP3-1 KRTAP2-3 KRTAP3-2 KRTAP1-4 KRTAP4-12 KRTAP1-5 KRT39 KRTAP4-8 KRTAP2-4 KRT40
nsv574999	Chr.17:40910399 - 40979621 on Build GRCh38	Loss	KRT23 KRT39 KRT40
esv3640560	Chr.17:40902724 - 41042362 on Build GRCh38	Gain	KRTAP3-2 KRTAP3-3 KRTAP1-4 KRT23 KRTAP1-5 KRTAP1-1 KRT39 KRT40 KRTAP1-3 KRTAP3-1

More Information

Additional Information:

For this assay, SNP(s) [rs116713622] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Function(s)

structural molecule activity