Genomic Map
Back To TopAssay Details
Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 27 - Exon 28 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | ||||
| NR_135497.1 | ||||
| NR_135498.1 | ||||
| NR_135499.1 | ||||
| NR_135500.1 | ||||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | BAD92028.1 | |||
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | AAI10623.1 | |||
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 PLA2G4C-AS1
C19orf68
CABP5
PLA2G4C
ELSPBP1
BSPH1
LIG1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
GRWD1
ZNF114
SIGLEC16
SNAR-A4
SNAR-G2
LOC100287477
CGB2
SNORD34
MIR4750
CA11
SIGLEC11
FAM83E
MIR6799
SNORD32A
DBP
SPACA4
SNAR-D
PRR12
CARD8
SCAF1
SULT2B1
PLA2G4C-AS1
PTOV1
TMEM143
PRMT1
SNAR-A2
RRAS
IRF3
FUT2
FUZ
TULP2
FTL
MIR4751
NUCB1-AS1
SNORD35B
CARD8-AS1
MIR4749
ALDH16A1
SNAR-C4
LOC101059948
PTOV1-AS1
CGB7
IZUMO1
C19orf73
TEAD2
VRK3
ADM5
BSPH1
KDELR1
ATF5
SNAR-C1
SNAR-C3
GYS1
SNAR-B2
CGB8
FCGRT
RCN3
LHB
CCDC155
MIR6798
MIR6800
TBC1D17
KCNA7
SNAR-A9
SLC17A7
PTOV1-AS2
KCNJ14
MIR5088
RUVBL2
LIG1
LOC101928295
BCL2L12
ZNF473
FGF21
BCAT2
MIR4324
SNORD35A
BAX
NTF4
FLT3LG
PTH2
LMTK3
FLJ26850
AKT1S1
NUCB1
SNAR-A12
CYTH2
NTN5
CD37
GFY
PRRG2
FUT1
SNAR-C2
SNAR-A8
GRIN2D
SNAR-A1
MIR150
SPHK2
MAMSTR
SNAR-A6
SNAR-A14
IL4I1
C19orf68
CABP5
CPT1C
SNAR-A5
SNAR-G1
RPL13A
SNRNP70
NUP62
PIH1D1
CGB1
PNKP
LIN7B
AP2A1
SNAR-A13
DHDH
SEC1P
PPP1R15A
SNAR-A11
LOC105447645
HSD17B14
SNAR-C5
MED25
SLC6A16
SNORD33
ELSPBP1
HRC
CGB5
CCDC114
SNAR-B1
SNAR-A10
SYNGR4
SNAR-A3
PLEKHA4
PLA2G4C
TRPM4
EMP3
RASIP1
SNAR-A7
PPFIA3
DKKL1
LOC105372430
CGB3
RPL18
TSKS
RPS11
NOSIP
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
PLA2G4C-AS1
C19orf68
CABP5
SYNGR4
ZNF114
PLA2G4C
TMEM143
EMP3
KDELR1
LIG1
GRIN2D
ELSPBP1
CARD8-AS1
CCDC114
CARD8
|
Back To TopMore Information
Set Membership: |
Intragenic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
Back To Top