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See other ATP2A1 CNV Assays ›
Gene Symbol
ATP2A1
Assay Reference Genome
Location

Chr.16:28880921 on build GRCh38
Cytoband
16p11.2
Assay ID Hs01179478_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 487

Gene Name:

 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1

Gene Aliases:

 ATP2A, SERCA1

Location:

 Chr.16:28878488-28904509 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATP2A1 NM_001286075.1 NP_001273004.1
NM_004320.4 NP_004311.1
NM_173201.3 NP_775293.1
AK128456.1
AK291314.1
AL706356.1
BC037354.1 AAH37354.1
BX537389.1 CAD97631.1
BX537784.1 CAD97841.1
BX647365.1
BX647366.1
BX647367.1
BX648544.1
BX649072.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4987n54 Chr.16:28824884 - 29032129 on Build GRCh38 Gain ATXN2L CD19 SH2B1 NFATC2IP MIR4721 RABEP2 ATP2A1 SPNS1 ATP2A1-AS1 MIR4517 TUFM LAT
esv3892826 Chr.16:28814728 - 29032129 on Build GRCh38 Gain+Loss ATXN2L CD19 SH2B1 NFATC2IP MIR4721 RABEP2 ATP2A1 SPNS1 ATP2A1-AS1 MIR4517 TUFM LAT
esv3638349 Chr.16:28860611 - 28907894 on Build GRCh38 Gain SH2B1 RABEP2 ATP2A1 ATP2A1-AS1
esv2758640 Chr.16:28163817 - 29139232 on Build GRCh38 Gain+Loss NPIPB6 SH2B1 MIR4721 RABEP2 MIR6862-1 ATP2A1 SGF29 LAT ATXN2L NUPR1 CLN3 LOC101928215 XPO6 NPIPB9 SBK1 SULT1A2 MIR6862-2 NPIPB8 NPIP TUFM EIF3CL EIF3C CD19 NFATC2IP RRN3P2 SULT1A1 APOBR SPNS1 ATP2A1-AS1 MIR4517 IL27
nsv519100 Chr.16:28826194 - 29032129 on Build GRCh38 Gain ATXN2L CD19 SH2B1 NFATC2IP MIR4721 RABEP2 ATP2A1 SPNS1 ATP2A1-AS1 MIR4517 TUFM LAT
nsv1059555 Chr.16:28373144 - 29195838 on Build GRCh38 Gain SH2B1 MIR4721 RABEP2 MIR6862-1 ATP2A1 SGF29 LAT ATXN2L NUPR1 LOC107984832 CLN3 LOC101928215 NPIPB9 SULT1A2 MIR6862-2 NPIPB8 NPIP TUFM EIF3CL EIF3C CD19 NFATC2IP RRN3P2 SULT1A1 APOBR SPNS1 ATP2A1-AS1 MIR4517 IL27
dgv2831n100 Chr.16:28812594 - 29032542 on Build GRCh38 Gain ATXN2L CD19 SH2B1 NFATC2IP MIR4721 RABEP2 ATP2A1 SPNS1 ATP2A1-AS1 MIR4517 TUFM LAT
esv3570454 Chr.16:28799004 - 29032129 on Build GRCh38 Gain ATXN2L CD19 SH2B1 NFATC2IP MIR4721 RABEP2 ATP2A1 SPNS1 ATP2A1-AS1 MIR4517 TUFM LAT
nsv571805 Chr.16:28824174 - 29032129 on Build GRCh38 Loss ATXN2L CD19 SH2B1 NFATC2IP MIR4721 RABEP2 ATP2A1 SPNS1 ATP2A1-AS1 MIR4517 TUFM LAT
dgv2830n100 Chr.16:28620264 - 29032542 on Build GRCh38 Gain SH2B1 MIR4721 MIR6862-2 RABEP2 NPIPB8 ATP2A1 TUFM LAT EIF3C ATXN2L CD19 NFATC2IP NPIPB9 SULT1A1 SPNS1 ATP2A1-AS1 MIR4517

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