Hs01189367_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140786809 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3	1	674	NP_061723.1
	NM_031410.2	1	674	NP_113598.1
	NM_031411.2	1	674	NP_113599.1
	AF152305.1	1	519	AAD43699.1
	AF152479.1	1	519	AAD43740.1
	AF169695.1	1	519	AAF89692.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHA5 PCDHGA9 PCDHA9 PCDHB19P PCDHGA8 PCDHGB8P PCDHA6 PCDHGA11 PCDHB17P PCDHGB4 PCDHGA4 PCDHA3 PCDHA8 PCDHGA3 PCDHB15 PCDHGA10 PCDHAC2 PCDHGA7 PCDHGA6 PCDHB16 PCDHGA12 PCDHB10 PCDHA1 PCDHA12 PCDHA10 PCDHGB3 PCDHA7 PCDHB4 PCDHGA2 SLC25A2 PCDHAC1 PCDHB14 PCDHB3 PCDHGA1 PCDHGA5 PCDHA13 PCDHB12 PCDHB2 PCDHB6 PCDHB1 TAF7 PCDHB13 PCDHB9 PCDHB11 LOC101926905 PCDHB18P PCDHGB1 PCDHA4 PCDHB7 PCDHA11 PCDHB8 PCDHGB6 PCDHGB5 PCDHA2 PCDHB5 PCDHGB7 PCDHGB2
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	HARS2 VTRNA1-3 PCDHA5 PCDHA4 HARS PCDHA11 PCDHA9 VTRNA1-1 PCDHA1 PCDHA6 VTRNA1-2 PCDHA2 PCDHA10 ZMAT2 PCDHA3 PCDHA7 PCDHA8
dgv970n67	Chr.5:140784829 - 140843644 on Build GRCh38	Gain	PCDHA5 PCDHA1 PCDHA6 PCDHA2 PCDHA4 PCDHA3 PCDHA7 PCDHA8

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding