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See other MMP28 CNV Assays ›
Gene Symbol
MMP28
Assay Reference Genome
Location

Chr.17:35766463 on build GRCh38
Cytoband
17q12
Assay ID Hs01195537_cn
Size
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 79148

Gene Name:

 matrix metallopeptidase 28

Gene Aliases:

 EPILYSIN, MM28, MMP-25, MMP-28, MMP25

Location:

 Chr.17:35756249-35795707 on Build GRCh38

Assay Gene Location:

 Within Exon 12
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MMP28 NM_024302.4 8 1930 NP_077278.1
NM_032950.3 9 1993 NP_116568.1
NR_111988.1 8 1900
XM_011525225.1 7 1705 XP_011523527.1
XM_011525226.2 9 2042 XP_011523528.1
XM_011525227.1 9 1671 XP_011523529.1
XM_011525228.1 9 1696 XP_011523530.1
XM_011525229.2 8 1571 XP_011523531.1
XM_011525230.1 8 1796 XP_011523532.1
XM_011525231.1 XP_011523533.1
XM_011525232.2 8 1852 XP_011523534.2
XM_017025061.1 9 1660 XP_016880550.1
XM_017025062.1 8 1926 XP_016880551.1
XM_017025064.1 XP_016880553.1
AF219624.1 AAK01480.1
AF315683.1 8 1615 AAG41981.1
AF330002.1 8 1875 AAK01706.1
AK122604.1 8 1900
AY358987.1 8 1805 AAQ89346.1
BM702847.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv3892999 Chr.17:35252863 - 35925533 on Build GRCh38 Loss PEX12 GAS2L2 TAF15 SLFN11 SLFN13 C17orf50 AP2B1 RDM1 LOC105371933 SLFN5 LRRC37A8P HEATR9 SNORD7 SLFN14 CCL5 LOC105371743 SLFN12L MMP28 SLFN12 RASL10B

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More Information


Additional Information:

For this assay, SNP(s) [rs75582397] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

metalloprotease

Gene Ontology Categories:

Function(s) Process(es)


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