Hs01203591_cn

• Gene Symbol: CDHR5
• Assay Reference Genome Location: Chr.11:617464 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 53841
• Gene Name: cadherin related family member 5
• Gene Aliases: MLPCDH, MU-PCDH, MUCDHL, MUPCDH
• Location: Chr.11:616565-625067 on Build GRCh38
• Assay Gene Location: Within Exon 15

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDHR5	NM_001171968.1	15	2572	NP_001165439.1
	NM_021924.4	15	2590	NP_068743.2
	NM_031264.3	14	2008	NP_112554.2
	XM_006718253.3	15	2250	XP_006718316.1
	XM_011520188.2	15	2157	XP_011518490.1
	XM_011520189.2	15	2064	XP_011518491.1
	XM_011520190.2	13	1823	XP_011518492.1
	AF258675.1			AAG16732.1
	AF258676.1	16	2746	AAG16733.1
	AF276242.1	14	1843	AAG30821.1
	AF301909.1	15	2425	AAG33495.1
	AI640262.1	1	228
	AK000226.1	15	2608	BAA91021.1
	AK000384.1	14	1913	BAA91130.1
	AK025012.1	8	1578	BAB15052.1
	AK300991.1	15	1860
	AK308040.1	15	2514
	AY358368.1	15	2429	AAQ88734.1
	BC038405.1	14	1865	AAH38405.1
	DQ491193.1	14	1915

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	MIR210HG LOC101059906 RASSF7 LRRC56 CDHR5 LMNTD2 MIR210 HRAS SCT IRF7 LOC143666 PHRF1
nsv552861	Chr.11:589246 - 662407 on Build GRCh38	Loss	CDHR5 DEAF1 SCT IRF7 DRD4 PHRF1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	TMEM80 CD151 MIR210HG CDHR5 RNH1 POLR2L TOLLIP DRD4 AP2A2 CRACR2B LOC101059906 RASSF7 PNPLA2 EPS8L2 PANO1 MIR210 TALDO1 PDDC1 SNORA52 CHID1 MUC5B LRRC56 TOLLIP-AS1 LMNTD2 ANO9 LOC171391 HRAS DEAF1 MUC2 SCT IRF7 RPLP2 LOC143666 PHRF1 SLC25A22 MUC6 MIR6744 LOC101927503 PIDD1 TSPAN4 PTDSS2 MUC5AC CEND1 SIGIRR
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	MIR210HG LRRC56 CDHR5 LMNTD2 HRAS DEAF1 SCT IRF7 DRD4 LOC143666 PHRF1 RASSF7 MIR210
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	TMEM80 CD151 MIR210HG CDHR5 RNH1 POLR2L DRD4 AP2A2 CRACR2B LOC101059906 RASSF7 B4GALNT4 PNPLA2 EPS8L2 PANO1 MIR210 TALDO1 PDDC1 SNORA52 CHID1 LRRC56 LMNTD2 ANO9 LOC171391 HRAS DEAF1 SCT IRF7 RPLP2 LOC143666 PHRF1 SLC25A22 PIDD1 PKP3 TSPAN4 PTDSS2 CEND1 SIGIRR
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	MIR210HG LRRC56 CDHR5 LMNTD2 RNH1 HRAS DEAF1 SCT IRF7 DRD4 LOC143666 PHRF1 LOC101059906 RASSF7 MIR210 PTDSS2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	TMEM80 CD151 MIR210HG CDHR5 RNH1 POLR2L DRD4 CRACR2B LOC101059906 RASSF7 PNPLA2 EPS8L2 PANO1 MIR210 TALDO1 PDDC1 SNORA52 CHID1 LRRC56 LMNTD2 LOC171391 HRAS DEAF1 SCT IRF7 RPLP2 LOC143666 PHRF1 SLC25A22 PIDD1 TSPAN4 PTDSS2 CEND1
dgv1524n54	Chr.11:610277 - 619789 on Build GRCh38	Loss	CDHR5 IRF7 PHRF1
nsv552856	Chr.11:549119 - 619789 on Build GRCh38	Gain	MIR210HG RASSF7 LRRC56 CDHR5 LMNTD2 MIR210 IRF7 LOC143666 PHRF1
nsv552854	Chr.11:511805 - 619789 on Build GRCh38	Loss	MIR210HG LOC101059906 RASSF7 LRRC56 CDHR5 LMNTD2 MIR210 HRAS IRF7 LOC143666 PHRF1
dgv1523n54	Chr.11:557342 - 656940 on Build GRCh38	Gain	MIR210HG RASSF7 CDHR5 LMNTD2 MIR210 DEAF1 SCT IRF7 DRD4 LOC143666 PHRF1
nsv552865	Chr.11:612843 - 626730 on Build GRCh38	Loss	CDHR5 SCT IRF7
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	PGGHG IFITM3 MIR210HG LRRC56 CDHR5 LMNTD2 ANO9 RNH1 HRAS IFITM2 IRF7 LOC143666 PHRF1 IFITM1 LOC101059906 RASSF7 B4GALNT4 IFITM5 PKP3 MIR210 PTDSS2 SIGIRR
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	TMEM80 CD151 MIR210HG CDHR5 RNH1 POLR2L TOLLIP DRD4 AP2A2 CRACR2B LOC101059906 RASSF7 B4GALNT4 PNPLA2 EPS8L2 PANO1 MIR210 TALDO1 PDDC1 SNORA52 CHID1 MUC5B LRRC56 LMNTD2 ANO9 LOC171391 HRAS DEAF1 MUC2 SCT IRF7 RPLP2 LOC143666 PHRF1 SLC25A22 MUC6 MIR6744 LOC101927503 PIDD1 PKP3 TSPAN4 PTDSS2 MUC5AC CEND1 SIGIRR
nsv552862	Chr.11:605856 - 619789 on Build GRCh38	Loss	CDHR5 IRF7 PHRF1
esv2762889	Chr.11:606294 - 653614 on Build GRCh38	Loss	CDHR5 DEAF1 SCT IRF7 DRD4 PHRF1
nsv528415	Chr.11:558884 - 620599 on Build GRCh38	Loss	MIR210HG RASSF7 CDHR5 LMNTD2 MIR210 IRF7 LOC143666 PHRF1

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
cell differentiation
regulation of microvillus length
intermicrovillar adhesion

Function(s)

calcium ion binding
protein binding
beta-catenin binding
cell adhesion molecule binding