Hs01230592_cn

• Gene Symbol: CPSF3L
• Assay Reference Genome Location: Chr.1:1311824 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 54973
• Gene Name: cleavage and polyadenylation specific factor 3-like
• Gene Aliases: CPSF73L, INT11, INTS11, RC-68, RC68
• Location: Chr.1:1311585-1324687 on Build GRCh38
• Assay Gene Location: Within Exon 19

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CPSF3L	NM_001256456.1	19	2390	NP_001243385.1
	NM_001256460.1	18	2024	NP_001243389.1
	NM_001256462.1	15	1623	NP_001243391.1
	NM_001256463.1	15	1614	NP_001243392.1
	NM_017871.5	17	1917	NP_060341.2
	XM_011541647.1	19	2068	XP_011539949.1
	XM_011541648.1	19	2072	XP_011539950.1
	XM_011541650.1	17	1797	XP_011539952.1
	XM_017001557.1	18	1873	XP_016857046.1
	XM_017001558.1	19	1927	XP_016857047.1
	AA687684.1	1	252
	AK000549.1	9	1061	BAA91246.1
	AK021939.1	15	1580	BAB13943.1
	AK023356.1			BAB14541.1
	AK056652.1	19	2312
	AK058018.1	15	1589
	AK092190.1	14	1650
	AK123641.1	6	2861
	AK291387.1	19	2353
	AK297350.1
	AL136813.1	17	1896	CAB66747.1
	BC000675.2	14	1457	AAH00675.2
	BC007978.2	17	1879	AAH07978.1
	BC008041.2	12	1241	AAH08041.1
	BC013904.2	13	1326	AAH13904.2
	BC020199.1	12	1241	AAH20199.1
	CR533557.1			CAG38588.1
	KF274554.1	3	314

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	MIR429 MIR200A LOC107985729 TAS1R3 MIR6859-1 ATAD3B OR4F5 HES4 B3GALT6 CALML6 MIR6727 LOC105378947 SCNN1D ANKRD65 PRKCZ CDK11B MORN1 FNDC10 MIB2 LOC729737 LOC101928626 WASH7P LOC107984841 LOC105378591 LOC105378948 OR4F16 LINC00115 ATAD3C LOC100130417 MMP23A AURKAIP1 CCNL2 LOC148413 MRPL20 LOC100133331 LOC105378592 FAM41C MMP23B GABRD GNB1 LOC102725121 MIR6859-2 TMEM52 ISG15 LOC100287934 SDF4 LOC100129534 MIR6723 PUSL1 TMEM88B KLHL17 MIR200B LOC284600 LINC01128 MXRA8 CFAP74 FAM132A MIR1302-2 LOC105378589 SAMD11 NADK CPSF3L LOC105378949 FAM87B TNFRSF4 TNFRSF18 LOC100288069 TMEM240 PERM1 SLC35E2 FAAP20 LOC100134822 OR4F29 AGRN TTLL10-AS1 UBE2J2 ATAD3A DVL1 VWA1 PLEKHN1 LINC01342 FAM138A CDK11A MTND1P23 LOC102724312 C1orf159 LOC100288175 MIR6726 MIR6808 NOC2L SLC35E2B TTLL10 ACAP3 LOC100506504 RNF223 SKI SSU72 LOC107985728 CPTP DDX11L1 MTND2P28 LOC100132287
nsv544971	Chr.1:1294063 - 1351426 on Build GRCh38	Loss	MIR6726 MIR6808 CPTP TAS1R3 DVL1 ACAP3 CPSF3L PUSL1 MIR6727
nsv544969	Chr.1:1290683 - 1374597 on Build GRCh38	Loss	SCNN1D MIR6726 MIR6808 CPTP TAS1R3 DVL1 ACAP3 MXRA8 CPSF3L AURKAIP1 PUSL1 MIR6727
dgv7n100	Chr.1:1306835 - 1379057 on Build GRCh38	Loss	MIR6808 CPTP TAS1R3 DVL1 ACAP3 MXRA8 CPSF3L AURKAIP1 PUSL1 MIR6727
nsv470680	Chr.1:1070426 - 1378635 on Build GRCh38	Loss	UBE2J2 MIR429 FAM132A MIR200A TAS1R3 DVL1 CPSF3L LINC01342 B3GALT6 MIR6727 SCNN1D TNFRSF4 TNFRSF18 C1orf159 MIR6726 MIR6808 TTLL10 ACAP3 SDF4 RNF223 PUSL1 CPTP MIR200B MXRA8 AURKAIP1 TTLL10-AS1
dgv6n100	Chr.1:1301750 - 1362354 on Build GRCh38	Gain+Loss	MIR6808 CPTP TAS1R3 DVL1 ACAP3 MXRA8 CPSF3L PUSL1 MIR6727
nsv1160772	Chr.1:1027585 - 1333467 on Build GRCh38	Duplication	UBE2J2 MIR429 FAM132A MIR200A TAS1R3 CPSF3L LINC01342 B3GALT6 MIR6727 SCNN1D TNFRSF4 TNFRSF18 C1orf159 LOC100288175 MIR6726 TTLL10 LOC105378948 ACAP3 SDF4 RNF223 PUSL1 AGRN CPTP MIR200B TTLL10-AS1
nsv1160788	Chr.1:1282706 - 1376336 on Build GRCh38	Deletion	SCNN1D MIR6726 MIR6808 CPTP TAS1R3 DVL1 ACAP3 MXRA8 CPSF3L AURKAIP1 PUSL1 MIR6727
nsv10161	Chr.1:776731 - 1777210 on Build GRCh38	Gain+Loss	MIR429 FAM132A MIR200A LOC107985729 TAS1R3 ATAD3B SAMD11 NADK CPSF3L HES4 FAM87B B3GALT6 MIR6727 SCNN1D TNFRSF4 ANKRD65 TNFRSF18 CDK11B LOC100288069 FNDC10 MIB2 TMEM240 PERM1 SLC35E2 LOC105378948 LINC00115 ATAD3C LOC100130417 MMP23A AGRN AURKAIP1 CCNL2 LOC148413 MRPL20 TTLL10-AS1 UBE2J2 ATAD3A DVL1 VWA1 FAM41C PLEKHN1 LINC01342 MMP23B CDK11A ISG15 LOC102724312 C1orf159 LOC100288175 MIR6726 MIR6808 NOC2L SLC35E2B TTLL10 ACAP3 LOC100287934 SDF4 RNF223 PUSL1 TMEM88B KLHL17 SSU72 LOC107985728 CPTP MIR200B LOC284600 LINC01128 MXRA8
esv3890636	Chr.1:1304555 - 1353203 on Build GRCh38	Loss	MIR6808 CPTP TAS1R3 DVL1 ACAP3 MXRA8 CPSF3L PUSL1 MIR6727
nsv950452	Chr.1:1106921 - 1637538 on Build GRCh38	Deletion	UBE2J2 MIR429 FAM132A MIR200A LOC107985729 ATAD3A TAS1R3 DVL1 ATAD3B VWA1 CPSF3L LINC01342 B3GALT6 MIR6727 SCNN1D TNFRSF4 MMP23B ANKRD65 TNFRSF18 CDK11B FNDC10 MIB2 TMEM240 LOC102724312 C1orf159 MIR6726 MIR6808 TTLL10 ACAP3 SDF4 PUSL1 ATAD3C TMEM88B SSU72 CPTP MIR200B MXRA8 AURKAIP1 CCNL2 LOC148413 MRPL20 TTLL10-AS1
nsv1000169	Chr.1:1281678 - 1362354 on Build GRCh38	Gain	SCNN1D MIR6726 MIR6808 CPTP TAS1R3 DVL1 ACAP3 MXRA8 CPSF3L PUSL1 MIR6727
esv2758912	Chr.1:1263940 - 1384492 on Build GRCh38	Loss	UBE2J2 MIR6726 MIR6808 TAS1R3 DVL1 ACAP3 CPSF3L PUSL1 MIR6727 SCNN1D CPTP MXRA8 AURKAIP1
dgv2n67	Chr.1:877618 - 1426500 on Build GRCh38	Gain	UBE2J2 MIR429 FAM132A MIR200A TAS1R3 DVL1 SAMD11 CPSF3L PLEKHN1 LINC01342 HES4 B3GALT6 MIR6727 SCNN1D TNFRSF4 ANKRD65 TNFRSF18 ISG15 C1orf159 PERM1 LOC100288175 MIR6726 MIR6808 NOC2L TTLL10 LOC105378948 ACAP3 SDF4 RNF223 PUSL1 TMEM88B KLHL17 LOC100130417 AGRN LOC107985728 CPTP MIR200B LOC284600 MXRA8 AURKAIP1 CCNL2 LOC148413 MRPL20 TTLL10-AS1
nsv469848	Chr.1:1146082 - 1322235 on Build GRCh38	Gain	UBE2J2 MIR429 FAM132A MIR200A MIR6726 TTLL10 ACAP3 SDF4 CPSF3L PUSL1 B3GALT6 MIR6727 SCNN1D TNFRSF4 TNFRSF18 MIR200B TTLL10-AS1

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Process(es)

snRNA processing
snRNA transcription from RNA polymerase II promoter

Function(s)

protein binding
hydrolase activity