Hs01236801_cn

• Gene Symbol: TRAPPC2L
• Assay Reference Genome Location: Chr.16:88860965 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 51693
• Gene Name: trafficking protein particle complex 2-like
• Gene Aliases: HSPC176
• Location: Chr.16:88856220-88862686 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TRAPPC2L	NM_001318524.1	5	512	NP_001305453.1
	NM_001318525.1	5	491	NP_001305454.1
	NM_001318526.1	5	556	NP_001305455.1
	NM_001318527.1	5	828	NP_001305456.1
	NM_001318528.1	5	471	NP_001305457.1
	NM_001318529.1	5	810	NP_001305458.1
	NM_001318530.1	5	468	NP_001305459.1
	NM_001318532.1	5	807	NP_001305461.1
	NM_016209.4	5	494	NP_057293.1
	NR_134670.1	6	678
	NR_134671.1	6	610
	XM_017023270.1	5	538	XP_016878759.1
	AF089106.1	5	487	AAF00568.1
	AF161524.1	5	446	AAF29139.1
	AK126779.1	4	1391	BAC86686.1
	AK307253.1	6	610
	AK310805.1	5	762
	AK311885.1
	AX771012.1	5	487	CAE01175.1
	AX771013.1	5	446	CAE01176.1
	AX771014.1	4	352	CAE01177.1
	BC011369.1	5	438	AAH11369.1
	BC018024.1	5	445	AAH18024.1
	BC105809.1	5	460	AAI05810.1
	BG283878.1	5	494
	BI754306.1	6	620
	BX340702.2	5	774
	BX384775.2	5	764
	BX419849.2	5	457
	DA293122.1
	DA295904.1	5	430
	DA833474.1	5	430

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv37n68	Chr.16:88767460 - 88944903 on Build GRCh38	Loss	PABPN1L LOC101927793 CBFA2T3 TRAPPC2L CDT1 LOC105371409 GALNS APRT LOC107987238 LOC100129697 PIEZO1
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	MIR4722 ACSF3 CDH15 CBFA2T3 LINC00304 TRAPPC2L CDT1 LOC100289580 GALNS LOC107987238 CTU2 PIEZO1 PABPN1L ZNF778 LOC101927793 LOC339059 LOC105371409 APRT LOC400558 LOC100129697 SLC22A31
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	ACSF3 CDH15 CBFA2T3 LINC00304 TRAPPC2L CDT1 GALNS LOC107987238 PABPN1L LOC101927793 LOC105371409 APRT LOC400558 LOC100129697 SLC22A31
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	LOC100287036 ACSF3 CDH15 CBFA2T3 LOC105371414 LINC00304 TRAPPC2L CDT1 ANKRD11 LOC100289580 GALNS LOC107987238 PIEZO1 PABPN1L ZNF778 LOC101927793 LOC339059 LOC105371409 APRT LOC400558 LOC100129697 SLC22A31
esv3639555	Chr.16:88745961 - 88899576 on Build GRCh38	Gain	PABPN1L LOC101927793 CBFA2T3 TRAPPC2L CDT1 GALNS APRT LOC107987238 PIEZO1
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	ACSF3 CDH15 CBFA2T3 LINC00304 TRAPPC2L CDT1 GALNS LOC107987238 PABPN1L LOC101927793 LOC105371409 APRT LOC400558 LOC100129697
nsv952071	Chr.16:88790893 - 89019992 on Build GRCh38	Deletion	PABPN1L LOC101927793 CBFA2T3 TRAPPC2L CDT1 LOC105371409 GALNS APRT LOC107987238 LOC100129697
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	SPG7 FAM157C VPS9D1-AS1 CBFA2T3 TRAPPC2L CDK10 LOC105371419 PABPN1L SNAI3-AS1 ZNF276 VPS9D1 TUBB8P7 LOC105371409 URAHP MIR4722 SNORD68 CDH15 LOC107984817 CYBA DEF8 SPIRE2 CENPBD1 APRT LOC100129697 SLC22A31 ACSF3 GAS8 RNF166 LOC105371414 LINC00304 CDT1 ANKRD11 LOC100289580 LOC107987238 LOC101927817 CTU2 TUBB3 AFG3L1P SNAI3 MVD LOC100287036 DBNDD1 GALNS GAS8-AS1 CHMP1A SPATA2L PIEZO1 CPNE7 SPATA33 FANCA PRDM7 RPL13 ZNF778 IL17C MC1R LOC101927793 DPEP1 LOC339059 TCF25 LOC400558
esv3639561	Chr.16:88837996 - 88882065 on Build GRCh38	Gain	PABPN1L CBFA2T3 TRAPPC2L GALNS
dgv3065n100	Chr.16:88711587 - 88927172 on Build GRCh38	Gain	MIR4722 CBFA2T3 TRAPPC2L CDT1 LOC100289580 GALNS LOC107987238 CTU2 PIEZO1 PABPN1L LOC101927793 LOC339059 APRT
nsv1063441	Chr.16:88767066 - 88861882 on Build GRCh38	Loss	TRAPPC2L CDT1 GALNS APRT LOC107987238 PIEZO1

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein