Hs01236801_cn

• Gene Symbol: TRAPPC2L
• Assay Reference Genome Location: Chr.16:88860965 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 51693
• Gene Name: trafficking protein particle complex 2-like
• Gene Aliases: HSPC176
• Location: Chr.16:88856220-88862686 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TRAPPC2L	NM_001318524.1	5	512	NP_001305453.1
	NM_001318525.1	5	491	NP_001305454.1
	NM_001318526.1	5	556	NP_001305455.1
	NM_001318527.1	5	828	NP_001305456.1
	NM_001318528.1	5	471	NP_001305457.1
	NM_001318529.1	5	810	NP_001305458.1
	NM_001318530.1	5	468	NP_001305459.1
	NM_001318532.1	5	807	NP_001305461.1
	NM_016209.4	5	494	NP_057293.1
	NR_134670.1	6	678
	NR_134671.1	6	610
	XM_017023270.1	5	538	XP_016878759.1
	AF089106.1	5	487	AAF00568.1
	AF161524.1	5	446	AAF29139.1
	AK126779.1	4	1391	BAC86686.1
	AK307253.1	6	610
	AK310805.1	5	762
	AK311885.1
	AX771012.1	5	487	CAE01175.1
	AX771013.1	5	446	CAE01176.1
	AX771014.1	4	352	CAE01177.1
	BC011369.1	5	438	AAH11369.1
	BC018024.1	5	445	AAH18024.1
	BC105809.1	5	460	AAI05810.1
	BG283878.1	5	494
	BI754306.1	6	620
	BX340702.2	5	774
	BX384775.2	5	764
	BX419849.2	5	457
	DA293122.1
	DA295904.1	5	430
	DA833474.1	5	430

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv37n68	Chr.16:88767460 - 88944903 on Build GRCh38	Loss	PABPN1L LOC100129697 PIEZO1 TRAPPC2L LOC105371409 CBFA2T3 LOC101927793 APRT GALNS CDT1 LOC107987238
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	ZNF778 PIEZO1 LOC100289580 TRAPPC2L LOC105371409 CBFA2T3 MIR4722 LOC101927793 LOC339059 CTU2 GALNS CDT1 LOC107987238 PABPN1L LOC100129697 CDH15 LOC400558 SLC22A31 ACSF3 APRT LINC00304
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	TRAPPC2L LOC105371409 CBFA2T3 LOC101927793 GALNS CDT1 LOC107987238 PABPN1L LOC100129697 CDH15 LOC400558 SLC22A31 ACSF3 APRT LINC00304
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	ZNF778 PIEZO1 ANKRD11 LOC100289580 TRAPPC2L LOC105371409 CBFA2T3 LOC100287036 LOC101927793 LOC339059 LOC105371414 GALNS CDT1 LOC107987238 PABPN1L LOC100129697 CDH15 LOC400558 SLC22A31 ACSF3 APRT LINC00304
esv3639555	Chr.16:88745961 - 88899576 on Build GRCh38	Gain	PABPN1L PIEZO1 TRAPPC2L CBFA2T3 LOC101927793 APRT GALNS CDT1 LOC107987238
nsv952071	Chr.16:88790893 - 89019992 on Build GRCh38	Deletion	PABPN1L LOC100129697 TRAPPC2L LOC105371409 CBFA2T3 LOC101927793 APRT GALNS CDT1 LOC107987238
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	TRAPPC2L LOC105371409 CBFA2T3 LOC101927793 GALNS CDT1 LOC107987238 PABPN1L LOC100129697 CDH15 LOC400558 ACSF3 APRT LINC00304
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	VPS9D1-AS1 CBFA2T3 CTU2 SPATA33 AFG3L1P SPIRE2 ACSF3 SPG7 DBNDD1 ZNF276 ZNF778 PIEZO1 ANKRD11 CPNE7 TRAPPC2L DPEP1 DEF8 TUBB8P7 CDT1 VPS9D1 PABPN1L GAS8 CHMP1A LOC400558 APRT LINC00304 LOC105371419 RNF166 IL17C TUBB3 LOC100289580 LOC101927793 SNORD68 LOC105371414 RPL13 LOC107987238 LOC100129697 SNAI3-AS1 LOC101927817 MVD CDH15 FANCA MC1R LOC107984817 FAM157C PRDM7 GAS8-AS1 SNAI3 LOC105371409 LOC100287036 MIR4722 LOC339059 GALNS CENPBD1 CDK10 TCF25 SLC22A31 URAHP SPATA2L CYBA
esv3639561	Chr.16:88837996 - 88882065 on Build GRCh38	Gain	PABPN1L TRAPPC2L CBFA2T3 GALNS
nsv1063441	Chr.16:88767066 - 88861882 on Build GRCh38	Loss	PIEZO1 TRAPPC2L APRT GALNS CDT1 LOC107987238
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	PIEZO1 LOC100289580 TRAPPC2L LOC105371409 CBFA2T3 MIR4722 LOC101927793 LOC339059 CTU2 GALNS CDT1 LOC107987238 PABPN1L LOC100129697 APRT

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein