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See other TRAPPC2L CNV Assays ›
Gene Symbol
TRAPPC2L
Assay Reference Genome
Location

Chr.16:88859751 on build GRCh38
Cytoband
16q24.3
Assay ID Hs01288384_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 51693

Gene Name:

 trafficking protein particle complex 2-like

Gene Aliases:

 HSPC176

Location:

 Chr.16:88856220-88862686 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 4 - Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAPPC2L NM_001318524.1 NP_001305453.1
NM_001318525.1 NP_001305454.1
NM_001318526.1 NP_001305455.1
NM_001318527.1 NP_001305456.1
NM_001318528.1 NP_001305457.1
NM_001318529.1 NP_001305458.1
NM_001318530.1 NP_001305459.1
NM_001318532.1 NP_001305461.1
NM_016209.4 NP_057293.1
NR_134670.1
NR_134671.1
XM_017023270.1 XP_016878759.1
AF089106.1 AAF00568.1
AF161524.1 AAF29139.1
AK126779.1 BAC86686.1
AK307253.1
AK310805.1
AK311885.1
AX771012.1 CAE01175.1
AX771013.1 CAE01176.1
AX771014.1 CAE01177.1
BC011369.1 AAH11369.1
BC018024.1 AAH18024.1
BC105809.1 AAI05810.1
BG283878.1
BI754306.1
BX340702.2
BX384775.2
BX419849.2
DA209193.1
DA293122.1
DA295904.1
DA833474.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv37n68 Chr.16:88767460 - 88944903 on Build GRCh38 Loss CDT1 TRAPPC2L PIEZO1 PABPN1L APRT GALNS LOC101927793 LOC107987238 LOC100129697 LOC105371409 CBFA2T3
nsv1063024 Chr.16:88707330 - 89238482 on Build GRCh38 Gain CDT1 PABPN1L APRT SLC22A31 CTU2 LINC00304 ACSF3 LOC100129697 LOC105371409 LOC100289580 TRAPPC2L PIEZO1 CDH15 GALNS LOC101927793 LOC339059 LOC107987238 LOC400558 ZNF778 MIR4722 CBFA2T3
nsv471115 Chr.16:88801844 - 89197442 on Build GRCh38 Loss CDT1 PABPN1L APRT SLC22A31 LINC00304 ACSF3 LOC100129697 LOC105371409 TRAPPC2L CDH15 GALNS LOC101927793 LOC107987238 LOC400558 CBFA2T3
nsv573674 Chr.16:88738775 - 89325907 on Build GRCh38 Gain CDT1 LOC100287036 PABPN1L APRT SLC22A31 LINC00304 ACSF3 LOC100129697 LOC105371409 LOC100289580 TRAPPC2L PIEZO1 CDH15 GALNS LOC101927793 LOC339059 LOC107987238 LOC105371414 LOC400558 ZNF778 ANKRD11 CBFA2T3
esv3639555 Chr.16:88745961 - 88899576 on Build GRCh38 Gain CDT1 TRAPPC2L PIEZO1 PABPN1L APRT GALNS LOC101927793 LOC107987238 CBFA2T3
nsv819907 Chr.16:88805821 - 88860813 on Build GRCh38 Gain CDT1 TRAPPC2L APRT GALNS LOC107987238
nsv952071 Chr.16:88790893 - 89019992 on Build GRCh38 Deletion CDT1 TRAPPC2L PABPN1L APRT GALNS LOC101927793 LOC107987238 LOC100129697 LOC105371409 CBFA2T3
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss GAS8-AS1 APRT URAHP IL17C SNAI3 LOC100129697 SPIRE2 RPL13 DEF8 PIEZO1 FANCA DBNDD1 VPS9D1 TUBB8P7 ZNF778 ANKRD11 RNF166 AFG3L1P MVD TUBB3 CDK10 SLC22A31 LINC00304 CPNE7 ACSF3 SPG7 DPEP1 LOC101927817 SNORD68 PRDM7 CYBA TCF25 CBFA2T3 FAM157C CDT1 PABPN1L CTU2 VPS9D1-AS1 SNAI3-AS1 LOC100289580 GAS8 SPATA33 LOC101927793 CHMP1A LOC107987238 LOC400558 MC1R LOC105371419 MIR4722 LOC107984817 LOC100287036 LOC105371409 SPATA2L TRAPPC2L CDH15 GALNS LOC339059 CENPBD1 LOC105371414 ZNF276
esv3639561 Chr.16:88837996 - 88882065 on Build GRCh38 Gain TRAPPC2L PABPN1L GALNS CBFA2T3
nsv1063441 Chr.16:88767066 - 88861882 on Build GRCh38 Loss CDT1 TRAPPC2L PIEZO1 APRT GALNS LOC107987238
dgv3065n100 Chr.16:88711587 - 88927172 on Build GRCh38 Gain CDT1 PABPN1L APRT CTU2 LOC100289580 TRAPPC2L PIEZO1 GALNS LOC101927793 LOC339059 LOC107987238 MIR4722 CBFA2T3

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein

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