Hs01288384_cn

• Gene Symbol: TRAPPC2L
• Assay Reference Genome Location: Chr.16:88859751 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 51693
• Gene Name: trafficking protein particle complex 2-like
• Gene Aliases: HSPC176
• Location: Chr.16:88856220-88862686 on Build GRCh38
• Assay Gene Location: Overlaps Exon 4 - Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TRAPPC2L	NM_001318524.1			NP_001305453.1
	NM_001318525.1			NP_001305454.1
	NM_001318526.1			NP_001305455.1
	NM_001318527.1			NP_001305456.1
	NM_001318528.1			NP_001305457.1
	NM_001318529.1			NP_001305458.1
	NM_001318530.1			NP_001305459.1
	NM_001318532.1			NP_001305461.1
	NM_016209.4			NP_057293.1
	NR_134670.1
	NR_134671.1
	XM_017023270.1			XP_016878759.1
	AF089106.1			AAF00568.1
	AF161524.1			AAF29139.1
	AK126779.1			BAC86686.1
	AK307253.1
	AK310805.1
	AK311885.1
	AX771012.1			CAE01175.1
	AX771013.1			CAE01176.1
	AX771014.1			CAE01177.1
	BC011369.1			AAH11369.1
	BC018024.1			AAH18024.1
	BC105809.1			AAI05810.1
	BG283878.1
	BI754306.1
	BX340702.2
	BX384775.2
	BX419849.2
	DA209193.1
	DA293122.1
	DA295904.1
	DA833474.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv37n68	Chr.16:88767460 - 88944903 on Build GRCh38	Loss	GALNS CBFA2T3 APRT PIEZO1 LOC100129697 CDT1 LOC105371409 PABPN1L LOC107987238 LOC101927793 TRAPPC2L
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	CBFA2T3 APRT CDH15 PIEZO1 LOC100129697 LOC105371409 SLC22A31 ZNF778 LOC107987238 LINC00304 CTU2 TRAPPC2L MIR4722 GALNS ACSF3 LOC339059 CDT1 PABPN1L LOC101927793 LOC400558 LOC100289580
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	CBFA2T3 APRT CDH15 LOC100129697 LOC105371409 SLC22A31 LOC107987238 LINC00304 TRAPPC2L GALNS ACSF3 CDT1 PABPN1L LOC101927793 LOC400558
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	CBFA2T3 APRT CDH15 PIEZO1 LOC100129697 LOC105371414 LOC105371409 SLC22A31 ZNF778 LOC107987238 LINC00304 TRAPPC2L GALNS ANKRD11 ACSF3 LOC339059 LOC100287036 CDT1 PABPN1L LOC101927793 LOC400558 LOC100289580
esv3639555	Chr.16:88745961 - 88899576 on Build GRCh38	Gain	GALNS CBFA2T3 APRT PIEZO1 CDT1 PABPN1L LOC107987238 LOC101927793 TRAPPC2L
nsv952071	Chr.16:88790893 - 89019992 on Build GRCh38	Deletion	GALNS CBFA2T3 APRT LOC100129697 CDT1 LOC105371409 PABPN1L LOC107987238 LOC101927793 TRAPPC2L
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	CBFA2T3 APRT CDH15 LOC100129697 LOC105371409 LOC107987238 LINC00304 TRAPPC2L GALNS ACSF3 CDT1 PABPN1L LOC101927793 LOC400558
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	GAS8-AS1 PRDM7 VPS9D1 RNF166 DBNDD1 FAM157C MVD CENPBD1 FANCA LOC400558 CBFA2T3 APRT PIEZO1 LOC100129697 MC1R RPL13 SLC22A31 CTU2 CDK10 GAS8 GALNS SPATA33 CDT1 CYBA PABPN1L LOC101927793 CHMP1A DPEP1 LOC107984817 CDH15 LOC105371414 CPNE7 AFG3L1P LOC107987238 DEF8 LOC105371419 SPG7 SNAI3-AS1 ANKRD11 TUBB3 URAHP VPS9D1-AS1 SNORD68 LOC105371409 TCF25 ZNF778 LINC00304 IL17C SPIRE2 SPATA2L TRAPPC2L ZNF276 MIR4722 SNAI3 TUBB8P7 ACSF3 LOC339059 LOC100287036 LOC101927817 LOC100289580
esv3639561	Chr.16:88837996 - 88882065 on Build GRCh38	Gain	GALNS CBFA2T3 PABPN1L TRAPPC2L
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	CBFA2T3 APRT PIEZO1 LOC100129697 LOC105371409 LOC107987238 CTU2 TRAPPC2L MIR4722 GALNS LOC339059 CDT1 PABPN1L LOC101927793 LOC100289580
nsv1063441	Chr.16:88767066 - 88861882 on Build GRCh38	Loss	GALNS APRT PIEZO1 CDT1 LOC107987238 TRAPPC2L

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein