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See other PHF1 CNV Assays ›
Gene Symbol
PHF1
Assay Reference Genome
Location

Chr.6:33415279 on build GRCh38
Cytoband
6p21.32
Assay ID Hs01292954_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 5252

Gene Name:

 PHD finger protein 1

Gene Aliases:

 MTF2L2, PCL1, PHF2, TDRD19C, hPHF1

Location:

 Chr.6:33410751-33416453 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PHF1 NM_002636.4 NP_002627.1
NM_024165.2 NP_077084.1
NR_027692.1
XM_011514662.1 XP_011512964.1
XM_011514663.1 XP_011512965.1
XM_011514664.1 XP_011512966.1
XM_011514665.1 13 1457 XP_011512967.1
XM_011514666.1 13 1457 XP_011512968.1
XM_011514669.1 XP_011512971.1
XM_011514670.2 XP_011512972.1
XM_017010939.1 XP_016866428.1
AF029678.1 AAC52062.1
AF052205.1 AAC13273.1
AK225913.1
AK295412.1
AK299162.1
AK316499.1
BC008834.2 AAH08834.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss ZBTB9 SYNGAP1 PHF1 MIR5004 CUTA KIFC1
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss ZBTB22 SYNGAP1 PHF1 RPS18 DAXX WDR46 PFDN6 MIR6834 RGL2 MIR6873 B3GALT4 MIR5004 TAPBP CUTA VPS52 KIFC1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion RXRB PRRC2A HCG26 SKIV2L LY6G6D RNF5 WDR46 HLA-DPB1 BTNL2 LY6G5C SLC44A4 TNF PRRT1 VPS52 HLA-DRB6 TAP2 MIR6832 VWA7 PSMB8 LOC100507547 HSPA1A TNXA PPT2-EGFL8 C6orf25 SAPCD1-AS1 TAPBP CUTA LSM2 HLA-DPA1 HLA-DMA VARS DDAH2 C6orf47 ATP6V1G2-DDX39B HCG25 NFKBIL1 EGFL8 SNORA38 HCG24 BRD2 HLA-DMB PBX2 GPSM3 KIFC1 COL11A2 DDX39B ABHD16A RPS18 CSNK2B MIR4646 MIR6873 C4A DXO PSMB9 MIR219A1 LOC100294145 RING1 SNORD52 HSPA1B C6orf48 HLA-DPB2 LTA APOM DAXX GPANK1 AIF1 C2 SAPCD1 HCG23 HLA-DOA LOC100287329 HSD17B8 MICB SNORD48 HLA-DQB1 LOC102725068 NELFE SYNGAP1 PHF1 TAP1 AGPAT1 MCCD1 PFDN6 CLIC1 HLA-DOB MIR6833 HLA-DQA1 SLC39A7 LY6G6F B3GALT4 C4B C6orf10 CYP21A1P STK19 MIR6721 C2-AS1 HSPA1L NEU1 ATP6V1G2 HLA-DRB5 SNORD117 PSMB8-AS1 MIR1236 BAG6 HLA-DQA2 CYP21A2 LY6G6C LY6G5B PPT2 RGL2 LST1 HLA-DRB1 FKBPL HLA-DRA ZBTB12 DDX39B-AS1 ZBTB22 LOC101929163 PPP1R2P1 HLA-DQB2 NCR3 HCP5 EHMT2 ATF6B ZBTB9 LY6G6E MIR6834 TNXB SNORD84 AGER MSH5 MIR5004 LTB NOTCH4 MIR3135B HLA-DQB1-AS1 CFB MSH5-SAPCD1
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion RXRB PRRC2A HCG26 SKIV2L LY6G6D RNF5 WDR46 HLA-DPB1 BTNL2 LY6G5C SLC44A4 TNF PRRT1 VPS52 HLA-DRB6 TAP2 MIR6832 VWA7 PSMB8 LOC100507547 HSPA1A TNXA PPT2-EGFL8 C6orf25 SAPCD1-AS1 TAPBP CUTA LSM2 HLA-DPA1 HLA-DMA VARS DDAH2 C6orf47 ATP6V1G2-DDX39B HCG25 NFKBIL1 EGFL8 SNORA38 HCG24 BRD2 HLA-DMB PBX2 GPSM3 KIFC1 COL11A2 DDX39B ABHD16A RPS18 CSNK2B MIR4646 MIR6873 C4A DXO PSMB9 MIR219A1 LOC100294145 RING1 SNORD52 HSPA1B C6orf48 HLA-DPB2 LTA APOM DAXX GPANK1 AIF1 C2 SAPCD1 HCG23 HLA-DOA LOC100287329 HSD17B8 MICB SNORD48 HLA-DQB1 LOC102725068 NELFE SYNGAP1 PHF1 TAP1 AGPAT1 MCCD1 PFDN6 CLIC1 HLA-DOB MIR6833 HLA-DQA1 SLC39A7 LY6G6F B3GALT4 C4B C6orf10 CYP21A1P STK19 MIR6721 C2-AS1 HSPA1L NEU1 ATP6V1G2 HLA-DRB5 SNORD117 PSMB8-AS1 MIR1236 BAG6 HLA-DQA2 CYP21A2 LY6G6C LY6G5B PPT2 RGL2 LST1 HLA-DRB1 FKBPL HLA-DRA ZBTB12 DDX39B-AS1 ZBTB22 LOC101929163 PPP1R2P1 HLA-DQB2 NCR3 HCP5 EHMT2 ATF6B ZBTB9 LY6G6E MIR6834 TNXB SNORD84 AGER MSH5 MIR5004 LTB NOTCH4 MIR3135B HLA-DQB1-AS1 CFB MSH5-SAPCD1
nsv602832 Chr.6:33414464 - 33552444 on Build GRCh38 Loss ZBTB9 SYNGAP1 PHF1 MIR5004 CUTA
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion HLA-DPB2 RXRB DAXX HCG25 PSMB8-AS1 WDR46 HLA-DQA2 HLA-DOA HLA-DPB1 HCG24 RGL2 BRD2 HLA-DMB HSD17B8 VPS52 KIFC1 HLA-DQB1 COL11A2 TAP2 ZBTB22 SYNGAP1 PHF1 RPS18 PSMB8 TAP1 PPP1R2P1 HLA-DQB2 PFDN6 HLA-DOB HLA-DQA1 SLC39A7 ZBTB9 MIR6834 MIR6873 PSMB9 MIR219A1 B3GALT4 MIR5004 TAPBP CUTA MIR3135B HLA-DQB1-AS1 HLA-DPA1 LOC100294145 HLA-DMA RING1

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