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See other CPSF3L CNV Assays ›
Gene Symbol
CPSF3L
Assay Reference Genome
Location

Chr.1:1312270 on build GRCh38
Cytoband
1p36.33
Assay ID Hs01295886_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54973

Gene Name:

 cleavage and polyadenylation specific factor 3-like

Gene Aliases:

 CPSF73L, INT11, INTS11, RC-68, RC68

Location:

 Chr.1:1311585-1324687 on Build GRCh38

Assay Gene Location:

 Within Exon 17
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CPSF3L NM_001256456.1 17 2115 NP_001243385.1
NM_001256460.1 16 1749 NP_001243389.1
NM_001256462.1 13 1348 NP_001243391.1
NM_001256463.1 13 1339 NP_001243392.1
NM_017871.5 15 1642 NP_060341.2
XM_011541647.1 17 1793 XP_011539949.1
XM_011541648.1 17 1797 XP_011539950.1
XM_011541650.1 15 1522 XP_011539952.1
XM_017001557.1 16 1598 XP_016857046.1
XM_017001558.1 17 1652 XP_016857047.1
AK000549.1 7 786 BAA91246.1
AK021939.1 13 1305 BAB13943.1
AK023356.1 15 1560 BAB14541.1
AK056652.1 17 2037
AK058018.1 13 1314
AK092190.1 12 1375
AK123641.1 4 2586
AK291387.1 17 2078
AK297350.1 16 1699
AL136813.1 15 1621 CAB66747.1
BC000675.2 12 1182 AAH00675.2
BC007978.2 15 1604 AAH07978.1
BC008041.2 10 966 AAH08041.1
BC013904.2 11 1051 AAH13904.2
BC020199.1 10 966 AAH20199.1
CR533557.1 15 1563 CAG38588.1
KF274554.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss SAMD11 LOC100133331 MIR200B B3GALT6 MIR6859-1 NADK LOC100132287 UBE2J2 LOC105378591 LOC284600 ATAD3B VWA1 AGRN MMP23A LOC105378947 GABRD MORN1 LOC105378592 TAS1R3 OR4F16 LINC00115 LOC100288069 OR4F29 KLHL17 LOC105378948 MMP23B LOC148413 WASH7P SLC35E2 MIR200A LOC100130417 ATAD3C SDF4 LOC105378949 PERM1 SCNN1D TNFRSF18 ACAP3 MRPL20 FAAP20 CALML6 LOC102724312 LOC102725121 GNB1 PRKCZ TTLL10 LOC100506504 ATAD3A SKI LINC01128 PUSL1 CDK11B MTND2P28 TTLL10-AS1 MTND1P23 LOC107984841 DVL1 OR4F5 LOC105378589 DDX11L1 CPSF3L MIB2 LINC01342 LOC100287934 TMEM52 LOC101928626 MXRA8 AURKAIP1 FAM41C SLC35E2B MIR6808 FAM132A LOC100288175 ISG15 ANKRD65 HES4 FNDC10 FAM138A MIR6859-2 TNFRSF4 LOC107985729 TMEM240 CCNL2 PLEKHN1 FAM87B MIR429 CPTP C1orf159 CDK11A MIR6726 LOC100134822 MIR1302-2 TMEM88B LOC100129534 CFAP74 MIR6723 LOC107985728 RNF223 SSU72 MIR6727 NOC2L LOC729737
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss MIR6726 ACAP3 CPSF3L MIR6808 DVL1 TAS1R3 MIR6727 PUSL1 CPTP
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss SCNN1D MIR6726 ACAP3 CPSF3L MXRA8 AURKAIP1 MIR6808 DVL1 TAS1R3 MIR6727 PUSL1 CPTP
dgv7n100 Chr.1:1306835 - 1379057 on Build GRCh38 Loss ACAP3 CPSF3L MXRA8 AURKAIP1 MIR6808 DVL1 TAS1R3 MIR6727 PUSL1 CPTP
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss TTLL10 TNFRSF4 MIR200B B3GALT6 PUSL1 UBE2J2 TTLL10-AS1 MIR200A DVL1 MIR429 SDF4 CPTP C1orf159 MIR6726 CPSF3L LINC01342 SCNN1D TNFRSF18 ACAP3 MXRA8 AURKAIP1 MIR6808 FAM132A RNF223 TAS1R3 MIR6727
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss ACAP3 CPSF3L MXRA8 MIR6808 DVL1 TAS1R3 MIR6727 PUSL1 CPTP
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TTLL10 TNFRSF4 MIR200B B3GALT6 PUSL1 LOC105378948 UBE2J2 TTLL10-AS1 MIR200A MIR429 SDF4 CPTP C1orf159 MIR6726 CPSF3L AGRN LINC01342 SCNN1D TNFRSF18 ACAP3 FAM132A RNF223 LOC100288175 TAS1R3 MIR6727
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion SCNN1D MIR6726 ACAP3 CPSF3L MXRA8 AURKAIP1 MIR6808 DVL1 TAS1R3 MIR6727 PUSL1 CPTP
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss TTLL10 SAMD11 ATAD3A LINC01128 MIR200B B3GALT6 PUSL1 NADK CDK11B UBE2J2 TTLL10-AS1 DVL1 LOC284600 ATAD3B CPSF3L VWA1 AGRN MIB2 LINC01342 MMP23A LOC100287934 MXRA8 AURKAIP1 FAM41C SLC35E2B MIR6808 FAM132A LOC100288175 ISG15 TAS1R3 ANKRD65 HES4 FNDC10 LINC00115 LOC100288069 TNFRSF4 KLHL17 LOC105378948 LOC107985729 MMP23B TMEM240 LOC148413 CCNL2 SLC35E2 MIR200A LOC100130417 PLEKHN1 FAM87B ATAD3C MIR429 SDF4 CPTP C1orf159 CDK11A MIR6726 PERM1 TMEM88B SCNN1D TNFRSF18 ACAP3 MRPL20 LOC107985728 RNF223 LOC102724312 SSU72 MIR6727 NOC2L
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss ACAP3 CPSF3L MXRA8 MIR6808 DVL1 TAS1R3 MIR6727 PUSL1 CPTP
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TTLL10 FNDC10 ATAD3A TNFRSF4 MIR200B B3GALT6 PUSL1 CDK11B LOC107985729 MMP23B TMEM240 LOC148413 CCNL2 UBE2J2 TTLL10-AS1 MIR200A DVL1 ATAD3C MIR429 SDF4 CPTP C1orf159 ATAD3B MIR6726 CPSF3L VWA1 MIB2 LINC01342 TMEM88B SCNN1D TNFRSF18 ACAP3 MRPL20 MXRA8 AURKAIP1 MIR6808 FAM132A LOC102724312 SSU72 TAS1R3 MIR6727 ANKRD65
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain SCNN1D MIR6726 ACAP3 CPSF3L MXRA8 MIR6808 DVL1 TAS1R3 MIR6727 PUSL1 CPTP
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss MIR6726 CPSF3L PUSL1 SCNN1D ACAP3 UBE2J2 MXRA8 AURKAIP1 MIR6808 DVL1 TAS1R3 MIR6727 CPTP
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain HES4 TTLL10 SAMD11 TNFRSF4 KLHL17 MIR200B B3GALT6 PUSL1 LOC105378948 LOC148413 CCNL2 UBE2J2 TTLL10-AS1 MIR200A LOC100130417 DVL1 PLEKHN1 MIR429 SDF4 CPTP C1orf159 LOC284600 MIR6726 CPSF3L AGRN LINC01342 PERM1 TMEM88B SCNN1D TNFRSF18 ACAP3 MRPL20 MXRA8 AURKAIP1 MIR6808 FAM132A LOC107985728 RNF223 LOC100288175 ISG15 TAS1R3 MIR6727 NOC2L ANKRD65
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR6726 TTLL10 CPSF3L TNFRSF4 MIR200B B3GALT6 PUSL1 SCNN1D TNFRSF18 ACAP3 UBE2J2 TTLL10-AS1 MIR200A FAM132A MIR6727 MIR429 SDF4

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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