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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2598957 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01301254_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 12 2799 NP_001248745.1
NM_002613.4 14 3010 NP_002604.1
NM_031268.5 11 2629 NP_112558.2
XM_011522521.2 14 6698 XP_011520823.1
XM_011522523.2 11 6322 XP_011520825.1
XM_017023271.1 13 7078 XP_016878760.1
XM_017023272.1 13 3634 XP_016878761.1
XM_017023273.1 13 3343 XP_016878762.1
XM_017023274.1 14 3481 XP_016878763.1
XM_017023275.1 10 6703 XP_016878764.1
XM_017023276.1 10 2947 XP_016878765.1
XM_017023277.1 11 3045 XP_016878766.1
BC033494.1 11 2542 AAH33494.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication NDUFB10 MIR3677 PRR35 MAPK8IP3 C16orf91 MIR3176 C16orf59 CASKIN1 RHBDL1 ABCA17P TPSD1 RHBDF1 ARHGDIG ERVK13-1 MPG IFT140 BAIAP3 PRSS29P SNORD60 HAGHL MRPS34 NPW IGFALS HBM PDIA2 WDR90 LOC105371049 WASIR2 HBQ1 MIR4516 CHTF18 DECR2 CEMP1 MLST8 SNORA10 RPS2 MEIOB FLJ42627 C1QTNF8 METRN DDX11L10 MIR1225 PIGQ SNHG19 MIR4717 NTHL1 E4F1 LMF1-AS1 AMDHD2 HN1L METTL26 MIR940 SNHG9 CAPN15 LMF1 GNPTG NHLRC4 TPSB2 SLC9A3R2 BRICD5 CLCN7 SSTR5-AS1 PKD1 LOC100287175 MRPL28 MIR662 LOC105371045 RHOT2 RAB11FIP3 MSRB1 MIR5587 MCRIP2 MIR3178 HBA1 ATP6V0C NME4 CRAMP1 DNASE1L2 LOC105371038 FAM173A TELO2 CCDC78 LOC107984876 CCNF SNORA64 MIR3180-5 SPSB3 LOC107987233 MIR6768 RPL23AP5 WFIKKN1 SYNGR3 LOC106660606 PGP MIR6767 EME2 UNKL RAB40C TSC2 LOC105371046 WDR24 NOXO1 ABCA3 RNF151 LOC105371047 LUC7L CACNA1H TPSG1 FBXL16 MSLN LOC729652 RGS11 TBC1D24 HAGH TPSAB1 SNRNP25 MIR6859-4 SSTR5 PTX4 TRAF7 HS3ST6 LINC00254 HBA2 PDPK1 LOC101929280 STUB1 CCDC154 KCTD5 SNORA78 UBE2I POLR3K FAHD1 LOC105371184 NPRL3 TBL3 NME3 RNPS1 TMEM204 PRR25 LINC00235 RAB26 LOC100134368 TSR3 AXIN1 MIR3177 PRSS27 MIR6511B1 ZNF598 HBZ FAM234A JMJD8 RPL3L TMEM8A ECI1 NARFL GFER LOC652276 GNG13 NTN3 RPUSD1 SOX8 NUBP2
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss PRSS27 TBC1D24 AMDHD2 ERVK13-1 LOC652276 TCEB2 MIR3178 CEMP1 ATP6V0C PRSS41 PRSS33 SRRM2-AS1 PDPK1 PRSS21 FLJ42627 KCTD5 SRRM2
dgv2693n100 Chr.16:2593295 - 2676863 on Build GRCh38 Gain ERVK13-1 LOC652276 PDPK1 FLJ42627
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain LOC652276 PDPK1
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss ERVK13-1 LOC652276 MIR3178 CEMP1 ATP6V0C TBC1D24 AMDHD2 PDPK1 FLJ42627
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR3677 MIR6768 MIR1225 SNHG19 LOC106660606 PGP MIR6767 MIR4717 E4F1 AMDHD2 C16orf59 CASKIN1 TSC2 ABCA17P MIR940 RNPS1 SNORD60 ABCA3 RAB26 BRICD5 MIR6511B1 LOC729652 LOC105371049 TBC1D24 PKD1 MIR4516 ECI1 LOC652276 MIR3178 CEMP1 TRAF7 ATP6V0C MLST8 DNASE1L2 NTN3 PDPK1 CCNF MIR3180-5
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss ERVK13-1 LOC652276 PRSS27 SRRM2-AS1 PDPK1 FLJ42627 KCTD5 SRRM2
dgv780e212 Chr.16:2595646 - 2700191 on Build GRCh38 Gain ERVK13-1 LOC652276 PDPK1 FLJ42627 KCTD5

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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