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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2598957 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01301254_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 12 2799 NP_001248745.1
NM_002613.4 14 3010 NP_002604.1
NM_031268.5 11 2629 NP_112558.2
XM_011522521.2 14 6698 XP_011520823.1
XM_011522523.2 11 6322 XP_011520825.1
XM_017023271.1 13 7078 XP_016878760.1
XM_017023272.1 13 3634 XP_016878761.1
XM_017023273.1 13 3343 XP_016878762.1
XM_017023274.1 14 3481 XP_016878763.1
XM_017023275.1 10 6703 XP_016878764.1
XM_017023276.1 10 2947 XP_016878765.1
XM_017023277.1 11 3045 XP_016878766.1
BC033494.1 11 2542 AAH33494.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication SLC9A3R2 CCDC154 MIR6859-4 NOXO1 DDX11L10 CCNF PDPK1 RAB11FIP3 DECR2 LOC107984876 SNHG9 HBZ NARFL FAM234A MIR5587 CAPN15 MIR3177 LMF1-AS1 LOC105371184 MIR662 MIR940 SNHG19 MPG HBM RPUSD1 TSC2 LINC00254 MIR4516 E4F1 WASIR2 SOX8 LOC105371045 NTHL1 RHBDL1 GFER RPL3L LOC105371047 PDIA2 UNKL LOC105371038 MIR3180-5 PKD1 UBE2I FLJ42627 MRPL28 POLR3K PTX4 SSTR5-AS1 NPRL3 C16orf59 TBL3 NHLRC4 PRR25 MAPK8IP3 RNF151 WDR90 MIR6768 MRPS34 TMEM204 BRICD5 SNORA10 SNORA78 CASKIN1 SSTR5 FAHD1 CCDC78 RNPS1 ECI1 ATP6V0C SNORD60 PRSS27 ABCA3 TRAF7 METTL26 AXIN1 HAGHL NPW C16orf91 RAB40C PRSS29P CEMP1 LOC105371049 MLST8 PIGQ STUB1 CRAMP1 FAM173A RHOT2 LOC101929280 MEIOB PGP IGFALS LOC105371046 RAB26 LINC00235 MCRIP2 MIR4717 KCTD5 C1QTNF8 FBXL16 HBA2 HS3ST6 CHTF18 CLCN7 HBQ1 NUBP2 AMDHD2 LOC107987233 SYNGR3 BAIAP3 MIR6767 EME2 TPSAB1 MIR3176 LOC652276 JMJD8 NME3 TPSG1 TSR3 WFIKKN1 SNRNP25 MSLN LOC106660606 MIR1225 TMEM8A ERVK13-1 RHBDF1 ARHGDIG HBA1 IFT140 HAGH ABCA17P MIR3677 TBC1D24 SPSB3 LMF1 ZNF598 DNASE1L2 WDR24 TPSB2 LOC100287175 GNPTG RPS2 NME4 GNG13 METRN TPSD1 NTN3 SNORA64 HN1L CACNA1H RGS11 TELO2 LUC7L MIR6511B1 MSRB1 MIR3178 LOC100134368 LOC729652 NDUFB10 RPL23AP5 PRR35
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss TCEB2 ERVK13-1 KCTD5 AMDHD2 PRSS41 FLJ42627 PDPK1 SRRM2 CEMP1 PRSS21 TBC1D24 MIR3178 ATP6V0C PRSS27 LOC652276 PRSS33 SRRM2-AS1
dgv2693n100 Chr.16:2593295 - 2676863 on Build GRCh38 Gain ERVK13-1 LOC652276 FLJ42627 PDPK1
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain LOC652276 PDPK1
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss TBC1D24 MIR3178 ERVK13-1 ATP6V0C LOC652276 AMDHD2 FLJ42627 PDPK1 CEMP1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR1225 TRAF7 MIR3180-5 PKD1 CCNF PDPK1 CEMP1 LOC105371049 ABCA17P MIR3677 TBC1D24 C16orf59 DNASE1L2 MLST8 PGP MIR6768 RAB26 MIR4717 NTN3 BRICD5 MIR940 SNHG19 CASKIN1 AMDHD2 MIR6511B1 RNPS1 ECI1 TSC2 MIR3178 MIR6767 MIR4516 ATP6V0C SNORD60 LOC652276 E4F1 LOC729652 ABCA3 LOC106660606
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss ERVK13-1 KCTD5 PRSS27 LOC652276 FLJ42627 PDPK1 SRRM2 SRRM2-AS1
dgv780e212 Chr.16:2595646 - 2700191 on Build GRCh38 Gain ERVK13-1 KCTD5 LOC652276 FLJ42627 PDPK1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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