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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2178601 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01307003_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 20 4277 NP_065815.1
AB037727.1 12 3414 BAA92544.1
AF451977.1 20 4343 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication ARHGDIG NTN3 LOC105371047 CRAMP1 ABCA17P PRSS29P SSTR5 LOC105371046 WASIR2 TPSAB1 IFT140 POLR3K RAB26 PRR35 METRN SPSB3 KCTD5 NHLRC4 PTX4 TRAF7 PRSS27 MSLN UBE2I CHTF18 SOX8 TELO2 DNASE1L2 WFIKKN1 RPUSD1 C1QTNF8 METTL26 MIR6511B1 C16orf59 TBL3 SNHG19 RAB11FIP3 CCDC78 RHOT2 LINC00235 ABCA3 CASKIN1 TPSD1 TPSB2 SNORD60 HS3ST6 NTHL1 HBQ1 RPS2 CACNA1H CAPN15 FBXL16 PRR25 WDR90 JMJD8 LMF1-AS1 NARFL TMEM8A PDPK1 FLJ42627 RHBDF1 LOC100134368 LOC105371045 HAGH RNPS1 LUC7L PDIA2 ECI1 LMF1 MLST8 MIR6768 SNHG9 TMEM204 RHBDL1 MIR3177 LOC107987233 STUB1 SYNGR3 SNORA10 MIR5587 LOC105371038 LOC101929280 GNPTG PGP PIGQ GNG13 SLC9A3R2 NME4 CLCN7 NPW MIR3180-5 RNF151 ZNF598 WDR24 LOC106660606 MCRIP2 RPL23AP5 BAIAP3 FAHD1 GFER RAB40C AXIN1 NPRL3 MRPS34 HBM LOC105371184 MAPK8IP3 EME2 TPSG1 MRPL28 HBZ CCDC154 MSRB1 MEIOB ERVK13-1 NME3 HN1L SSTR5-AS1 MIR6859-4 MIR940 TSR3 BRICD5 RPL3L TSC2 CCNF MPG LOC729652 ATP6V0C NDUFB10 CEMP1 E4F1 MIR6767 MIR1225 TBC1D24 IGFALS PKD1 HBA2 UNKL MIR3178 LINC00254 HAGHL LOC105371049 MIR4717 MIR662 RGS11 MIR3677 FAM173A NUBP2 MIR4516 LOC100287175 HBA1 MIR3176 SNORA78 DECR2 SNRNP25 NOXO1 AMDHD2 LOC107984876 SNORA64 DDX11L10 LOC652276 C16orf91 FAM234A
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss PGP SNORD60 SLC9A3R2 NTHL1 NPW MIR3180-5 E4F1 ZNF598 LOC106660606 MIR1225 GFER PKD1 RAB26 TRAF7 LOC105371049 RNPS1 MIR4717 DNASE1L2 MIR3677 MIR4516 ECI1 MLST8 MIR6511B1 TBL3 SNHG19 NOXO1 MIR940 SYNGR3 ABCA3 CASKIN1 BRICD5 TSC2
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss PGP SNORD60 DNASE1L2 MIR4516 ECI1 MIR3180-5 E4F1 MLST8 MIR6511B1 SNHG19 MIR1225 PKD1 RAB26 TRAF7 CASKIN1 BRICD5 LOC105371049 TSC2
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss PGP SNORD60 RNPS1 DNASE1L2 MIR3677 ECI1 E4F1 LOC106660606 MLST8 SNHG19 RAB26 MIR940 TRAF7 CASKIN1 BRICD5
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR6511B1 SNORD60 SNHG19 MIR1225 PKD1 RAB26 MIR4516 MIR3180-5 TRAF7 CASKIN1 LOC105371049 TSC2
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss PGP RNPS1 DNASE1L2 MIR3677 MIR940 ECI1 TRAF7 CASKIN1 E4F1 BRICD5 LOC106660606 MLST8
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain PGP SNORD60 NTN3 LOC729652 ATP6V0C ABCA17P MIR3180-5 CEMP1 E4F1 LOC106660606 MIR6767 MIR1225 TBC1D24 PKD1 RAB26 MIR3178 PDPK1 TRAF7 LOC105371049 RNPS1 MIR4717 DNASE1L2 MIR3677 MIR4516 ECI1 MLST8 MIR6768 MIR6511B1 C16orf59 SNHG19 AMDHD2 MIR940 ABCA3 CASKIN1 LOC652276 BRICD5 TSC2 CCNF
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion PGP SNORD60 RNPS1 MIR4717 DNASE1L2 MIR3677 ECI1 E4F1 LOC106660606 MLST8 SNHG19 RAB26 MIR940 ABCA3 TRAF7 CASKIN1 BRICD5

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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