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Gene Symbol
RPUSD1
Assay Reference Genome
Location

Chr.16:785585 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01316782_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 113000

Gene Name:

 RNA pseudouridylate synthase domain containing 1

Gene Aliases:

 C16orf40, RLUCL

Location:

 Chr.16:784974-788383 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RPUSD1 NM_001324086.1 6 1448 NP_001311015.1
NM_001324410.1 6 1349 NP_001311339.1
NM_001324411.1 5 1336 NP_001311340.1
NM_001324412.1 5 1250 NP_001311341.1
NM_001324413.1 6 1340 NP_001311342.1
NM_001324414.1 6 1396 NP_001311343.1
NM_001324415.1 6 1449 NP_001311344.1
NM_058192.2 6 1439 NP_478072.1
BC011783.2 5 1304 AAH11783.1
BC012951.2 2 939 AAH12951.2
CB529100.1 1 629

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4828n54 Chr.16:760143 - 828324 on Build GRCh38 Gain RPUSD1 PRR25 MSLN GNG13 MIR662 CHTF18
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain RPUSD1 PRR25 MSLN GNG13 MIR662 CHTF18
nsv817712 Chr.16:774098 - 810673 on Build GRCh38 Loss RPUSD1 PRR25 GNG13 CHTF18
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication HBQ1 PRR25 PDPK1 NPRL3 RAB40C JMJD8 LINC00235 SNHG19 FAM234A MIR6511B1 NDUFB10 HBA2 ABCA3 RNPS1 CCDC78 SNORA10 LOC105371049 LOC107987233 NHLRC4 ABCA17P HBZ GNPTG MIR1225 MIR4516 RHBDF1 LMF1-AS1 RGS11 TPSG1 HAGHL CRAMP1 MCRIP2 SNHG9 CACNA1H SNRNP25 LOC105371045 RPUSD1 LOC729652 GNG13 AXIN1 RPL23AP5 LOC105371047 SYNGR3 ATP6V0C HBM CASKIN1 FBXL16 SNORA64 MSLN WDR90 CHTF18 CLCN7 NTN3 SSTR5 FAM173A TBC1D24 E4F1 PTX4 C16orf91 MIR662 SOX8 POLR3K EME2 NUBP2 MLST8 NME3 WDR24 AMDHD2 TPSB2 TRAF7 UBE2I NPW LOC105371038 MIR6859-4 HAGH IGFALS MSRB1 ZNF598 WFIKKN1 UNKL ARHGDIG C1QTNF8 WASIR2 SNORD60 RAB26 CCDC154 STUB1 DDX11L10 LOC101929280 C16orf59 NME4 TMEM204 TELO2 HN1L LOC105371184 MRPS34 NOXO1 PIGQ LOC100287175 METRN TBL3 PRSS29P GFER NTHL1 TPSD1 RPS2 LOC100134368 MPG LINC00254 MIR3176 MRPL28 HS3ST6 MIR5587 RPL3L MIR3178 HBA1 CAPN15 RHBDL1 LUC7L RHOT2 MIR6767 NARFL RNF151 MAPK8IP3 CCNF BAIAP3 METTL26 CEMP1 MIR3677 TMEM8A PRR35 MIR6768 LMF1 LOC652276 LOC107984876 PRSS27 MEIOB KCTD5 MIR3180-5 PGP SLC9A3R2 ERVK13-1 TPSAB1 ECI1 DECR2 MIR3177 RAB11FIP3 MIR4717 FLJ42627 PDIA2 LOC106660606 MIR940 BRICD5 IFT140 SPSB3 TSR3 SNORA78 DNASE1L2 TSC2 FAHD1 SSTR5-AS1 PKD1 LOC105371046
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss CAPN15 RHBDL1 FBXL16 RHOT2 NARFL PRR25 MSLN RAB40C WDR90 CHTF18 JMJD8 STUB1 METTL26 LINC00235 FAM173A LOC101929280 PRR35 LOC105371184 CCDC78 MIR662 LOC107987233 NHLRC4 WDR24 HAGHL PIGQ LOC100287175 MCRIP2 METRN RAB11FIP3 LOC105371038 RPUSD1 GNG13 MIR3176 WFIKKN1 MIR5587
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss RHBDL1 FBXL16 RHOT2 NARFL MSLN WDR24 WDR90 CHTF18 HAGHL JMJD8 LOC100287175 STUB1 MCRIP2 FAM173A METRN LOC105371038 RPUSD1 GNG13 LOC105371184 CCDC78 MIR662
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss CAPN15 RHBDL1 FBXL16 RHOT2 NARFL PRR25 MSLN RAB40C WDR90 CHTF18 JMJD8 STUB1 METTL26 LINC00235 FAM173A LOC101929280 PRR35 LOC105371184 CCDC78 MIR662 LOC107987233 NHLRC4 WDR24 HAGHL PIGQ LOC100287175 MCRIP2 METRN RAB11FIP3 LOC105371038 RPUSD1 GNG13 MIR3176 WFIKKN1 MIR5587
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion CAPN15 RHBDL1 FBXL16 RHOT2 NARFL PRR25 MSLN RAB40C WDR90 CHTF18 JMJD8 STUB1 METTL26 SSTR5 LINC00235 FAM173A LOC101929280 PRR35 LOC105371184 CCDC78 MIR662 LMF1 LOC107984876 LOC107987233 SOX8 NHLRC4 WDR24 LMF1-AS1 HAGHL PIGQ LOC100287175 MCRIP2 METRN RAB11FIP3 LOC105371038 RPUSD1 GNG13 MIR3176 WFIKKN1 SSTR5-AS1 MIR5587 C1QTNF8
nsv571042 Chr.16:785298 - 847566 on Build GRCh38 Loss RPUSD1 PRR25 GNG13 CHTF18
nsv457312 Chr.16:760039 - 797743 on Build GRCh38 Loss RPUSD1 MSLN MIR662 CHTF18
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication RHBDL1 FBXL16 RHOT2 NARFL MSLN RAB40C WDR90 CHTF18 JMJD8 STUB1 METTL26 FAM173A LOC101929280 LOC105371184 CCDC78 MIR662 WDR24 HAGHL PIGQ LOC100287175 MCRIP2 METRN LOC105371038 RPUSD1 GNG13 WFIKKN1
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication CAPN15 RHBDL1 FBXL16 RHOT2 NARFL PRR25 MSLN RAB40C WDR90 CHTF18 JMJD8 STUB1 METTL26 LINC00235 FAM173A LOC101929280 PRR35 LOC105371184 CCDC78 MIR662 LOC107987233 NHLRC4 WDR24 HAGHL PIGQ LOC100287175 MCRIP2 METRN RAB11FIP3 LOC105371038 RPUSD1 GNG13 MIR3176 WFIKKN1 MIR5587

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More Information


Additional Information:

For this assay, SNP(s) [rs73491301] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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