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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2597280 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01329877_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 NP_001248745.1
NM_002613.4 NP_002604.1
NM_031268.5 NP_112558.2
XM_011522521.2 XP_011520823.1
XM_011522523.2 XP_011520825.1
XM_017023271.1 13 5401 XP_016878760.1
XM_017023272.1 13 1957 XP_016878761.1
XM_017023273.1 13 1666 XP_016878762.1
XM_017023274.1 14 1804 XP_016878763.1
XM_017023275.1 10 5026 XP_016878764.1
XM_017023276.1 10 1270 XP_016878765.1
XM_017023277.1 11 1368 XP_016878766.1
AB209835.1 BAD93072.1
AF017995.1 AAC51825.1
AK131060.1
AK222581.1 BAD96301.1
BC006339.2 AAH06339.2
BC012103.1 AAH12103.1
BC033494.1 AAH33494.1
CR536517.1 CAG38755.1
Y15056.1 CAA75341.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication NME3 NARFL MPG MSLN CLCN7 PGP TPSAB1 BAIAP3 RPS2 MSRB1 WDR24 ATP6V0C AXIN1 CCDC154 MIR3677 TSC2 RGS11 SNORD60 RAB26 EME2 MIR5587 MIR4516 TBL3 SNORA10 PTX4 LOC107984876 TMEM8A RNPS1 CRAMP1 WFIKKN1 GNPTG DNASE1L2 LOC105371045 MIR3178 FAM173A LOC100287175 TELO2 JMJD8 NTN3 RPL3L MLST8 BRICD5 FAM234A CASKIN1 SNHG9 LOC101929280 C16orf59 MEIOB TSR3 ABCA3 MIR6767 LMF1 PIGQ PDIA2 SLC9A3R2 RPL23AP5 RHOT2 MIR3180-5 HBZ LOC105371047 PRSS27 CACNA1H SSTR5 SSTR5-AS1 RAB40C MIR6768 ZNF598 FLJ42627 HBQ1 DDX11L10 CAPN15 LOC105371038 HN1L MIR1225 UBE2I MIR662 PDPK1 SNHG19 MIR6859-4 HS3ST6 LINC00254 PRR25 PRR35 LOC105371184 SNORA64 POLR3K ABCA17P LMF1-AS1 SPSB3 LOC105371046 TBC1D24 CCNF FAHD1 ERVK13-1 RNF151 WASIR2 LOC105371049 NME4 NHLRC4 MIR3176 PRSS29P WDR90 LOC729652 MRPL28 CCDC78 METRN NPW LINC00235 TPSD1 LOC652276 MIR3177 C16orf91 FBXL16 GFER RHBDL1 NTHL1 CHTF18 LOC106660606 METTL26 MIR940 NOXO1 SOX8 NDUFB10 KCTD5 TPSG1 ARHGDIG HBM GNG13 ECI1 RPUSD1 SYNGR3 LOC100134368 RHBDF1 HBA2 CEMP1 AMDHD2 MIR4717 C1QTNF8 LOC107987233 MCRIP2 IGFALS TPSB2 SNRNP25 HBA1 NPRL3 DECR2 UNKL HAGHL MRPS34 RAB11FIP3 NUBP2 TRAF7 LUC7L E4F1 MIR6511B1 TMEM204 SNORA78 PKD1 HAGH IFT140 MAPK8IP3 STUB1
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss ERVK13-1 SRRM2 MIR3178 PDPK1 CEMP1 TCEB2 AMDHD2 PRSS33 ATP6V0C PRSS27 SRRM2-AS1 KCTD5 PRSS21 LOC652276 TBC1D24 PRSS41 FLJ42627
dgv2693n100 Chr.16:2593295 - 2676863 on Build GRCh38 Gain ERVK13-1 PDPK1 LOC652276 FLJ42627
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss ERVK13-1 MIR3178 PDPK1 LOC652276 CEMP1 AMDHD2 ATP6V0C TBC1D24 FLJ42627
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain ECI1 C16orf59 ABCA3 PGP MIR6767 LOC105371049 CEMP1 AMDHD2 ATP6V0C MIR4717 MIR3180-5 LOC729652 MIR3677 TSC2 SNORD60 RAB26 MIR4516 MIR6768 LOC652276 RNPS1 MIR1225 LOC106660606 DNASE1L2 MIR3178 PDPK1 MIR940 SNHG19 TRAF7 E4F1 NTN3 MIR6511B1 PKD1 MLST8 ABCA17P BRICD5 CASKIN1 TBC1D24 CCNF
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss PRSS27 SRRM2-AS1 ERVK13-1 KCTD5 SRRM2 PDPK1 LOC652276 FLJ42627
dgv780e212 Chr.16:2595646 - 2700191 on Build GRCh38 Gain ERVK13-1 KCTD5 PDPK1 LOC652276 FLJ42627

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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