Genomic Map
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Target Gene Details
Entrez Gene ID: | 6506 |
Gene Name: | solute carrier family 1 member 2 |
Gene Aliases: |
EAAT2, GLT-1, HBGT |
Location: |
Chr.11:35251205-35420063 on Build GRCh38 |
Assay Gene Location: | Within Exon 16 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SLC1A2 | NM_001195728.2 | 12 | 7387 | NP_001182657.1 |
| NM_001252652.1 | 12 | 7452 | NP_001239581.1 | |
| NM_004171.3 | 11 | 7749 | NP_004162.2 | |
| XM_005253067.1 | 11 | 7226 | XP_005253124.1 | |
| XM_011520285.2 | 11 | 7263 | XP_011518587.1 | |
| XM_017018136.1 | 11 | 8046 | XP_016873625.1 | |
| XM_017018137.1 | 11 | 7266 | XP_016873626.1 | |
| XM_017018138.1 | 11 | 7250 | XP_016873627.1 | |
| XM_017018139.1 | 10 | 7291 | XP_016873628.1 | |
| AF131756.1 | 1 | 349 | ||
| AY066021.1 | 11 | 7440 | AAL57716.1 | |
| BC132768.1 | 11 | 7316 | ||
| BX538155.1 | 1 | 3259 | ||
| BX648750.1 | 1 | 3111 | ||
| CR626999.1 | 1 | 1895 | ||
| CR627009.1 | 1 | 1742 | ||
| CR627022.1 | 1 | 3761 | ||
| CR749842.1 | 1 | 3070 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv7733 | Chr.11:35243420 - 35276063 on Build GRCh38 | Insertion |
 SLC1A2
|
| nsv1042014 | Chr.11:34919190 - 37195907 on Build GRCh38 | Loss |
LDLRAD3
PDHX
RAG1
FJX1
RAG2
CD44
PRR5L
LOC100507144
MIR3973
TRIM44
LOC101928510
SLC1A2
COMMD9
TRAF6
C11orf74
PAMR1
MIR1343
|
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Additional Information:
For this assay, SNP(s) [rs115509919] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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