Hs01385892_cn

• Gene Symbol: CDH17
• Assay Reference Genome Location: Chr.8:94128263 on build GRCh38
• Cytoband: 8q22.1

Target Gene Details

• Entrez Gene ID: 1015
• Gene Name: cadherin 17
• Gene Aliases: CDH16, HPT-1, HPT1
• Location: Chr.8:94127162-94217303 on Build GRCh38
• Assay Gene Location: Within Exon 19

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDH17	NM_001144663.1	18	2602	NP_001138135.1
	NM_004063.3	18	2601	NP_004054.3
	XM_011516790.1	17	2360	XP_011515092.1
	AK130441.1	2	203
	AK300638.1	10	1480
	AK301001.1	13	1813
	AK312873.1
	BC112013.1	18	2574	AAI12014.1
	BC113464.1	18	2562
	U07969.1	18	2563	AAA19021.1
	X83228.1	18	2568	CAA58231.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1022473	Chr.8:91854892 - 94250166 on Build GRCh38	Loss	RUNX1T1 FAM92A1 RBM12B LOC105375640 LOC102724710 MIR8084 RBM12B-AS1 TRIQK PDP1 MIR378D2 GEM TMEM67 C8orf87 FLJ46284 CDH17 LINC00535

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

germinal center B cell differentiation
marginal zone B cell differentiation
transport
oligopeptide transport
cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
integrin-mediated signaling pathway
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
positive regulation of integrin activation by cell surface receptor linked signal transduction
adherens junction organization
oligopeptide transmembrane transport
spleen development

Function(s)

integrin binding
transporter activity
proton-dependent oligopeptide secondary active transmembrane transporter activity
calcium ion binding