Hs01415729_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140847929 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	158	NP_054724.1
	NM_031857.1	1	158	NP_114063.1
	AB002343.1	1	158
	AJ007610.1	1	467	CAC22257.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv599839	Chr.5:140837299 - 140848579 on Build GRCh38	Gain	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGB4 PCDHA10 PCDHA3 PCDHA13 PCDHGA7 PCDHB2 PCDHB1 PCDHGA10 PCDHB12 PCDHB13 PCDHGA12 PCDHAC1 PCDHA5 PCDHA2 PCDHGA5 TAF7 PCDHGA4 PCDHGB5 PCDHAC2 PCDHA11 PCDHA1 PCDHGB2 PCDHB8 PCDHA9 PCDHB14 PCDHB3 PCDHGB7 PCDHB15 PCDHGB1 PCDHGA2 PCDHB17P PCDHGB8P PCDHGA11 PCDHGA9 PCDHGA1 PCDHGA8 PCDHB4 PCDHA8 PCDHB18P PCDHB7 PCDHA4 PCDHGB6 PCDHB16 PCDHB11 PCDHB6 PCDHB9 SLC25A2 PCDHGB3 PCDHA7 PCDHB5 PCDHA12 LOC101926905 PCDHB10 PCDHB19P PCDHGA3 PCDHGA6 PCDHA6
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA11 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA11 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
nsv1133616	Chr.5:140842215 - 140848715 on Build GRCh38	Deletion	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
nsv442962	Chr.5:140844251 - 140864171 on Build GRCh38	Loss	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
dgv971n67	Chr.5:140842564 - 140859431 on Build GRCh38	Loss	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
dgv724n27	Chr.5:140847633 - 140852761 on Build GRCh38	Loss	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA8 PCDHA4 PCDHA2 HARS2 PCDHA10 PCDHA3 VTRNA1-1 ZMAT2 VTRNA1-2 PCDHA7 PCDHA11 PCDHA1 PCDHA6 VTRNA1-3 HARS PCDHA5 PCDHA9
esv2861013	Chr.5:140834461 - 140848573 on Build GRCh38	Duplication	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
dgv10094n54	Chr.5:140846323 - 140860465 on Build GRCh38	Loss	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
dgv10092n54	Chr.5:140835344 - 140850785 on Build GRCh38	Loss	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA10 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9
dgv1044e199	Chr.5:140843360 - 140849907 on Build GRCh38	Deletion	PCDHA8 PCDHA7 PCDHA4 PCDHA2 PCDHA3 PCDHA1 PCDHA6 PCDHA5 PCDHA9

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding